LOCUS       NM_001359671            1993 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus RIKEN cDNA 8030474K03 gene (8030474K03Rik), mRNA.
ACCESSION   NM_001359671 XM_001000772
VERSION     NM_001359671.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 1993)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 1993)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   4  (bases 1 to 1993)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   5  (bases 1 to 1993)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   6  (bases 1 to 1993)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   7  (bases 1 to 1993)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   8  (bases 1 to 1993)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL805980.28 and AK033245.1.
            
            On Jan 13, 2018 this sequence version replaced XM_001000772.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK033245.1, BB068599.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1029              AL805980.28        122166-123194
            1030-1991           AK033245.1         1028-1989
            1992-1993           AL805980.28        126149-126150
FEATURES             Location/Qualifiers
     source          1..1993
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 44.67 cM"
     gene            1..1993
                     /gene="8030474K03Rik"
                     /gene_synonym="Gm1142"
                     /note="RIKEN cDNA 8030474K03 gene"
                     /db_xref="GeneID:382231"
                     /db_xref="MGI:MGI:2685988"
     exon            1..1433
                     /gene="8030474K03Rik"
                     /gene_synonym="Gm1142"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..1739
                     /gene="8030474K03Rik"
                     /gene_synonym="Gm1142"
                     /codon_start=1
                     /product="uncharacterized protein LOC382231"
                     /protein_id="NP_001346600.1"
                     /db_xref="CCDS:CCDS90742.1"
                     /db_xref="GeneID:382231"
                     /db_xref="MGI:MGI:2685988"
                     /translation="MSSLGKAAVPTACDDEDTLLTGDANSQHQVSGSEAGLSQEGRER
                     LGDPVISPGVAEGPSPLQGPLEIREGEASLPGPESSDLGSGSKMEATEDTGSMLRDPE
                     GGATSPVDQEEEVDMDFLPQLSIEAMTVMRELTNLQLRKVCRYPSPRTCAAELAALWG
                     NVDEGSNRGALSPSSVRGKQGPEGALYPRGLGRGRAWGTPRRHTIGRMVSSEGVHYPS
                     SNPVSSDEFSDTHVMKGTAGLKEDQARSSGLTELDNIARHTNVRGRGNFVHIPPSVLS
                     SATWGVSSGMERQASGEQESSLAKKKPNMVWGKEGSRPSHHGVTAAAATASAAAPASA
                     STASGALPKTSPKKKQAQEKTSSSDVSRGYQGKNLPTWGQRLKSAFEGPTTLPPISGV
                     ALLGKASKCSLPSGPKEFKSICTGKKSIAKKTREPQAGPKEDNSPRDPGLQAQVPPHR
                     AEQPSVCMYRGEMSRGDFNIRAPQVPANPQFFSLSQRCARPRAPPAPAGEQNQLMDPI
                     FPNEESQQVIHGTPGCAQCEMLQKEIDELKEQLGLALL"
     exon            1434..1593
                     /gene="8030474K03Rik"
                     /gene_synonym="Gm1142"
                     /inference="alignment:Splign:2.1.0"
     exon            1594..1676
                     /gene="8030474K03Rik"
                     /gene_synonym="Gm1142"
                     /inference="alignment:Splign:2.1.0"
     exon            1677..1722
                     /gene="8030474K03Rik"
                     /gene_synonym="Gm1142"
                     /inference="alignment:Splign:2.1.0"
     exon            1723..1777
                     /gene="8030474K03Rik"
                     /gene_synonym="Gm1142"
                     /inference="alignment:Splign:2.1.0"
     exon            1778..1819
                     /gene="8030474K03Rik"
                     /gene_synonym="Gm1142"
                     /inference="alignment:Splign:2.1.0"
     exon            1820..1993
                     /gene="8030474K03Rik"
                     /gene_synonym="Gm1142"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaggctcgc caagttctcg gagaagcttg ccctagctgt gacgaaaggc cgtggtgagg
       61 agcggggaga ctcttcctcc gtatcgcatg ctgccgacat gagctctttg ggtaaggcgg
      121 cagtccccac agcctgtgat gatgaggaca cccttcttac cggagatgcg aactcccagc
      181 atcaggtgtc tggttctgaa gctggcttga gccaggaggg cagggagcgg ttaggggacc
      241 ctgtgatcag cccaggagtt gcagagggtc cgagccccct ccaagggcct ctggagatca
      301 gagagggtga ggccagcctc ccgggccccg agagcagtga cttagggtct gggtctaaga
      361 tggaggcaac agaggacaca ggcagcatgc ttagggatcc ggaaggcggg gccacttctc
      421 ccgtagacca agaagaagaa gttgacatgg atttcttgcc ccagctcagt attgaggcca
      481 tgactgtcat gcgagagctg accaacctac agctccgaaa agtctgcagg tacccgtccc
      541 cacgaacttg tgcggctgaa ctggctgccc tctggggaaa cgtagatgaa ggctccaaca
      601 gaggggcact gtctccgagc tctgtgagag ggaaacaggg ccccgaaggt gcactgtacc
      661 ccagaggcct ggggcgaggc agagcctggg ggaccccaag aagacacacc ataggtagga
      721 tggtgagcag tgaaggtgtc cactatccct cctcaaaccc tgtgtcttct gatgagttca
      781 gtgacactca tgtgatgaaa ggaaccgctg gcctcaaaga agaccaggcc aggtccagtg
      841 gcctcactga gctggataac atagccagac acacaaatgt ccgtggcaga ggaaattttg
      901 tccatattcc cccttctgta ctgtccagtg ctacctgggg agtcagctca ggcatggaaa
      961 ggcaggcttc aggagaacag gaaagctctt tggctaagaa aaagccaaat atggtctggg
     1021 gcaaagaagg gagcaggccc agccaccatg gagtgactgc agctgctgcc accgcctctg
     1081 ctgctgcccc tgcctcagct tctacagctt caggtgccct gcccaagacc agtcccaaaa
     1141 agaagcaagc tcaagagaag acctcctcct cagatgtctc aagaggatac caggggaaaa
     1201 acttgccaac atggggacag agactcaaat cagcatttga ggggccaacg actctacccc
     1261 caatctcagg ggttgctctg ctagggaagg caagtaaatg ctcactgcct tcagggccca
     1321 aagagttcaa gtccatctgc actgggaaga aatccatagc aaagaagaca agggagccac
     1381 aggcagggcc caaagaagat aactcaccga gagatcctgg tctgcaggcc caagttccac
     1441 cacacagggc agagcagcct tccgtgtgca tgtatcgtgg agaaatgagc aggggagact
     1501 tcaacatcag agcccctcaa gttccagcaa acccgcagtt cttctccttg agccagagat
     1561 gtgccagacc cagagcacca cctgcacctg ctggtgaaca gaatcaactt atggatccca
     1621 tattccctaa tgaagaaagt cagcaagtaa tacatgggac accaggttgt gcacagtgtg
     1681 agatgttaca gaaggaaata gatgaactca aggaacaact cgggctggca ctgctgtgac
     1741 ccagcgtttg aggactgcct atccatgctg ttctcctcgg tcatgcaggc cctcagtgaa
     1801 acgttccagg atccttgaag ttggactcaa gagtttctcc ccacagaaga ggccaaacta
     1861 ccacctgtgg atcctgcttc cttccagttt tcttcgacag cagtggttcc caccttccta
     1921 atgctatggc ctgctcatgg gcttcatttt gtgatgttaa ccctctacca taaagctatt
     1981 tcattgttac ttc
//
