LOCUS       NM_177656               1701 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus RIKEN cDNA 6820408C15 gene (6820408C15Rik), transcript
            variant 2, mRNA.
ACCESSION   NM_177656
VERSION     NM_177656.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   McClintock TS, Glasser CE, Bose SC and Bergman DA.
  TITLE     Tissue expression patterns identify mouse cilia genes
  JOURNAL   Physiol Genomics 32 (2), 198-206 (2008)
   PUBMED   17971504
  REMARK    GeneRIF: 6820408C15Rik is most abundantly expressed in tissues rich
            in highly ciliated cells, such as olfactory sensory neurons, and is
            predicted to be important to cilia.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK078482.1 and AW048149.1.
            
            On Jan 28, 2014 this sequence version replaced NM_177656.3.
            
            Transcript Variant: This variant (2) uses an alternate in-frame
            splice site in the 5' coding region, compared to variant 1. It
            encodes isoform 2, which is shorter than isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK078482.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1682              AK078482.1         1-1682
            1683-1701           AW048149.1         1-19                c
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 74.99 cM"
     gene            1..1701
                     /gene="6820408C15Rik"
                     /note="RIKEN cDNA 6820408C15 gene"
                     /db_xref="GeneID:228778"
                     /db_xref="MGI:MGI:3045333"
     exon            1..136
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            137..433
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             423..1487
                     /gene="6820408C15Rik"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="uncharacterized protein C20orf96 homolog isoform
                     2"
                     /protein_id="NP_808324.1"
                     /db_xref="CCDS:CCDS16885.1"
                     /db_xref="GeneID:228778"
                     /db_xref="MGI:MGI:3045333"
                     /translation="MAQKQTSRPQFSGNKFQVPVRLGPEKNLKPSTLPPLRQVKGRNK
                     SKTKNLNKIQPVQSQVSVEMANSTKTSGGLRRRDQTHHGKVQAKVRLMRSMLRNQRTS
                     LQELYSHEGYLSKLNKELIKAILDTEDSVALSVREMLQQQSILGSIIDILEYSNKKRV
                     QQLRSELQEWKEKEESKTNSLQREVDQLNSEIQKASEEVNFLDTYMDHEYPVKLVQIA
                     SHIRQVQQAKDNQQDELDNLSEMRETILALFSNVIQEKKKKILKSLVVNTQKPHENIL
                     LLKTLDRRRLQRCMVLFRELIEQMKEEIPILLSEVEQMCAELWNPREAVYKDVLLQRP
                     KCTPDMAVELNIPVQEPFPF"
     exon            434..488
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            489..588
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            589..701
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            702..860
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            861..960
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1118
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1220
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1221..1307
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1426
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1427..1684
                     /gene="6820408C15Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggttccagcc taacatccca acctctttga gtataggggc aacgattcag atctggctac
       61 ttcctgctga aaagggacag cctggggtgg gagagtccgg agtcggcgga gtcggcgggg
      121 tcctgctcat tgggaggaag caaagtcggg agtgaatacg agaaacaagt gatggaagtt
      181 ggatgaaagt ggaggtaaag agaagacgtt tgaaaatatg ttggaactcc gtggggcctc
      241 tgcagtcttg cctggctagg tctctctctg cgttccaagg ttgtcgtttc cttggagacc
      301 agacgctgcc agcagaaagc tcgcctagtc tccttgggat ccgttcttag acaagaggcg
      361 gcagaagcct caccggtatc tggagacagc ctatacccag aggacctgga ttcttttccc
      421 caatggcaca gaaacaaacc tcgagacctc aattctcagg gaacaagttt caagtacctg
      481 tgagattggg gccagagaag aacttgaagc catctactct gcctcccctc cgacaagtca
      541 aaggccgcaa caaaagcaag acgaagaatc tgaataaaat ccaaccagta cagtcccagg
      601 tctctgtaga gatggcaaac tcaacaaaga cttcaggagg acttcgaaga agggaccaaa
      661 cgcaccacgg gaaagtgcag gccaaggtcc ggctgatgag gtcgatgctt cgaaaccagc
      721 ggacctcgct ccaggagctc tacagccacg aaggctacct cagcaagctc aacaaggagc
      781 tgatcaaggc catcctggac actgaggaca gcgtggcctt gagcgtgcgt gaaatgctac
      841 agcagcagag tatcctcggg agtatcatcg acatcttgga atattcaaac aagaagcggg
      901 tgcagcagct gaggtctgag ctccaggagt ggaaagagaa ggaggagagc aagacaaaca
      961 gccttcagag ggaggtggat cagctgaact ccgagatcca gaaggccagc gaggaggtga
     1021 atttcctgga cacctacatg gatcacgagt atcccgtcaa gttggttcag atcgccagcc
     1081 acatacgcca ggtgcagcag gcaaaggaca accagcagga tgagctggac aaccttagcg
     1141 agatgcggga aaccatcctg gcactttttt ccaacgtaat tcaagagaag aagaagaaaa
     1201 tcctgaagtc tctggtcgtg aatactcaga aaccccatga gaacatactg ctgctgaaga
     1261 ccctggacag acggcgactg cagaggtgca tggtcttgtt cagagagctt attgaacaga
     1321 tgaaagaaga gattcccatc ctactctcag aggtggagca gatgtgtgca gagctctgga
     1381 acccgagaga ggccgtttat aaggatgttc tgcttcagag acccaagtgc accccagaca
     1441 tggctgttga gctcaacatt cctgtgcagg agccattccc cttctagatg cagtgttgcc
     1501 cctcttctcc ctcctccctt cccagcacca ggggttccgg ctggtgactt acaagatggt
     1561 atctctgtta tgaatctgac ccacagcgcc ctcttctacc cctctccctt gctgtttgga
     1621 ctaggcagga gttcctagtc cagcctgctt gttccttggt gccaataaag ctgtgtttgt
     1681 gtttaaaaaa aaaaaaaaaa a
//
