LOCUS       NM_027472               4536 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 5730455P16 gene (5730455P16Rik), mRNA.
ACCESSION   NM_027472 XM_001004474 XM_001004476 XM_126361 XM_902814 XM_906141
            XM_919691
VERSION     NM_027472.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4536)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 4536)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK078548.1, AK153246.1 and AL591146.21.
            
            On Dec 17, 2009 this sequence version replaced NM_027472.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK078548.1, AK135352.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3                 AK078548.1         2-4
            4-1331              AK153246.1         3-1330
            1332-4536           AL591146.21        27999-31203         c
FEATURES             Location/Qualifiers
     source          1..4536
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 47.8 cM"
     gene            1..4536
                     /gene="5730455P16Rik"
                     /note="RIKEN cDNA 5730455P16 gene"
                     /db_xref="GeneID:70591"
                     /db_xref="MGI:MGI:1917841"
     exon            1..174
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..1216
                     /gene="5730455P16Rik"
                     /codon_start=1
                     /product="protein Njmu-R1"
                     /protein_id="NP_081748.1"
                     /db_xref="CCDS:CCDS25132.1"
                     /db_xref="GeneID:70591"
                     /db_xref="MGI:MGI:1917841"
                     /translation="MLPSLQESLDGDEKELESSEEGGSAEERRLEPPPSSHYCLYSFR
                     GSRLTQNRGDSDDGRSGGINAETPSGDDFSLSLVDTNLPSEVEPELRSFIAKRLSKGA
                     VFEGLGNVASVELRIPGYRVGCYYCLFQQEKLLPEIAAMESEHNPSEYVVCFLGGSEK
                     GLELFRLELDKYIQGLKNNMNCEERSLGNDVKSYLNSWYEDVVCPIQRVVLLFQEKLT
                     FLLHAALSYTPVEFKESDEKTKRDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSV
                     IIDCSGPQPQFHNAGSNRFCEDWMQAFLHGAEAGNPFLFRQVLENFKLKAIQDTNNLK
                     RFIRQAEMNHYALFKCYMFLKNCGSGDILLKIVKVEHEEMPEAKSVVAVLEEFMREAL
                     V"
     exon            175..255
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            256..381
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            382..525
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            526..583
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            584..703
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            704..768
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            769..905
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            906..1009
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..4536
                     /gene="5730455P16Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      3567
                     /gene="5730455P16Rik"
     regulatory      4518..4523
                     /regulatory_class="polyA_signal_sequence"
                     /gene="5730455P16Rik"
                     /note="hexamer: AATAAT"
     polyA_site      4536
                     /gene="5730455P16Rik"
                     /note="major polyA site"
ORIGIN      
        1 gacggggaca cagggccccg aggaggttgc cgcgatgctc ccgtctttgc aggaatcgct
       61 ggatggggat gaaaaggagc tggagagcag cgaagagggt ggctccgcgg aggagcggag
      121 actcgagccg cctcccagca gccactactg cctgtacagc ttccgcggaa gcagattgac
      181 acagaatcga ggggatagtg atgatggacg ttcaggtggc ataaatgcag aaaccccctc
      241 tggtgatgat ttcagcctct ccttggtgga tactaatcta ccatctgaag tggagccgga
      301 acttcgcagt ttcattgcta agcgtctttc caagggagcg gtctttgaag ggctgggtaa
      361 tgttgcatct gtagagctga gaattccagg ttaccgagtt ggttgttatt actgcctttt
      421 ccaacaggaa aaactgcttc ctgaaatagc agcaatggaa tctgaacata acccttctga
      481 atatgtggtc tgcttcttag gaggctctga aaaaggactg gagcttttca ggcttgaact
      541 ggacaagtat attcaagggc tgaagaataa catgaattgt gaggaaagga gtctggggaa
      601 tgatgtaaag tcctatctga atagctggta tgaggatgtg gtgtgtccca tccaaagggt
      661 ggttctcctc tttcaggaga aactgacctt tctgctccat gctgctctaa gttacactcc
      721 tgttgaattt aaagagtcgg atgaaaaaac aaagagagac atcaacaggt ttctgagtgt
      781 ggccagtctc cagggactta ttcatgaagg caccatgacc tcgttatgca tggccatgac
      841 agaggaacag cataagtctg tgatcatcga ctgtagcggc ccccagcctc agttccacaa
      901 tgcaggaagc aaccgttttt gtgaggactg gatgcaagct ttcttacacg gtgctgaagc
      961 cggtaaccct tttcttttca gacaagtcct ggaaaacttt aaactaaagg ctatacaaga
     1021 cacaaacaat ttgaagagat ttatccgaca ggcagagatg aatcattacg ctctgtttaa
     1081 atgttacatg ttccttaaga actgtggcag tggagatatc cttttgaaga ttgttaaagt
     1141 ggaacatgaa gaaatgcccg aggccaaaag tgtggtggct gtccttgaag aattcatgag
     1201 agaagcgctt gtctgaagtt ccagtcccgt gttgaggatc tgtttcatgg agtgtattga
     1261 ggctgcatgt gggggctgta attaccattg tttataggat tgcactgccc taagatgact
     1321 ggaaacaccc cagcttcttc cttttgtgct ttttttgttt aatttaatta aacacaacaa
     1381 tcagaggaat gtcttcacca ggtcctaggc agacgctgtg ttacagctgg ggaattttgc
     1441 tgtctcataa atcctaagca cgtgctgcct aaagagctct ggagatgagt tttggcttct
     1501 tgggagttta ccgtagtgtt tagcaggatt tcctcctcca aaagaaacat agtatgcctt
     1561 tctcagtaca atgtagaagt ttgtaaagta catgatccta gcaagatgtg atgacacatg
     1621 cctataatcc cagctactca ggaggttgag gcaggaggtt gtgaggttcc aggccagcct
     1681 gagctactga gtaagtttat gtccagcttg gactacaggg cagtcatcac cttcctggtc
     1741 ttactgcacc atcagctcgc ttcattgaca gcctgttcat cctctgagtg cctgatacaa
     1801 accaatgggc aggaatgacg aagccacctt ttgaagcgaa tatacacacg aattatgagt
     1861 gtataagcac ttaaaaatga gctttatgta tagaaacttg tgggctggca aggtggctca
     1921 gaaggtaaag aaacctgcca ccaagtctga caacctatgt tcaatcccca aactcacttg
     1981 gtaggagaga accaactcca caagttgcct ctgacccata cagagctaca tactcaataa
     2041 ataaatacat gaagatatgg tgggctggag aggcagctca gcagttaaga gcattgttgc
     2101 tcttggagag gagccggcac ctacctggtg gctcaatttc aggggatttg acaccctgtt
     2161 ctgacctcct caagcgtcag gcacacatgt agtgtataga tatacatgca gacaaaacat
     2221 acacataaaa taatctaaaa ccagtaagaa agaaaagaaa gaggaagaga gagaagaaag
     2281 ggtatactag cttcaagatg aaacattctc tctgactaaa aagctcttgt ggcaatttac
     2341 acaataggta tttatttgcc aggagcctgt atttttttct tccttatttc tagataaaaa
     2401 tgctggaatt cttaagcagt attaagaaaa agggaaataa aacagttaat ataggaaata
     2461 tcctttacaa gcaaatataa gaatgcacat gtggtgattc atgtctttga atgtaacctt
     2521 ccacaagacg taggcagttg gaactccctg agttcagggc cagtctgatt tactgagtta
     2581 tatagtaagc ttcaggccag ccagaattac agagtgagtc cctgtctcaa taaataagaa
     2641 aataaacaat attttaaaaa ttaaaaaatg taaacaaatt cctctcaaca caattgctca
     2701 ttgattttag atctttctgt ctgtcataag cctcagatcg ttttgccctg agtcaattgc
     2761 aagagccctt gagtcgtcat ttctcatccc atgggtgcca gctgcagcca cacgcgtagc
     2821 tgttctgcat agctctttaa taaatccatt tggtaatgaa tttggtttag aaaatcagaa
     2881 ggcttatgtt ctcactgcct ttgggatgct cagaggagca tgagtctgtg aaacggaggc
     2941 attcttaact gcttgtaaac cctgctagga gctgagttct aactttcaaa gagactaatg
     3001 atatggcttt ctgcctttgc ttctccataa gtcagtctag ggataggagt caccacgccc
     3061 ttcctttccc tttaatgaga aatacaattc agtatcttca taaatgcttt catatggctt
     3121 taaagtttaa tagcttggat tataggcagt atagaaaaga atgtaagtag catttttata
     3181 gctatctgac ggctggatag tcagcagctc tgtggtactt ttcttgaatc ttttcccaat
     3241 gcacttggtg cccacttgga aatcattaaa aatgagcgac attaggacat cgagattttg
     3301 agtctctaaa atagtaatct ttatttttaa attcacaatc aggagcaaat agaattctaa
     3361 aagtaagtgt aggggttagg gaaacagctc agtgtaaagt actcgctatg caaacgtaag
     3421 gacctcagtt tgatcctcgg gacttaaata cagaagcagg agtgctagca tgtgcttgta
     3481 gtcccagcac tggggaggag actcagttct tactgccagc ccagctgact tggtaagctt
     3541 caggccagca gagaccttat ctgaaaacaa atggaaaaaa aaaaaagata gctcaatgga
     3601 taaaggccct ggctggcaag tctagagccc atgtgaaggt ggagggagag ctcactcctg
     3661 caagctgctc tctctctcac tctgtctatg catccttcag agctaactat taacaaacaa
     3721 gaaaacagaa gggtagatgg ctcctgagga ttgtcctctg acctccaaat gtttgtgcac
     3781 acaaataata atatatatac caataataaa taaaagcaaa tgctctacca aaaaataata
     3841 aaaataaacg caaatgcagc caggcaatgg tggtgcacac ctttaacccc agccctcagg
     3901 aggcagaggc agatggatct ctgagttcaa agtcagcctg gtctacagaa tgagttacag
     3961 aatagccagt tacacagaga aaccctgtct tggtaaaaag aaaaccaaaa caataataaa
     4021 ggagatgcat taagtcacgt gtggatatag gaaaaacata actctatatt ctttgcttat
     4081 ttataggtac ttctttgtaa tgtaagccca ctacactaca caattgtata tagtagtctt
     4141 atatttaaaa agaatctgca taggcagaga caggcggatt tctgagttcg aggtcagcct
     4201 ggtctacaga gtgagttcca ggacagccag ggctatacag agaaaccctg tctcaaaaaa
     4261 accaaaacaa aaaaacaaag aatctgcaaa attctgtacc actgaaaaaa gatgtcatgg
     4321 aattaattat cttgttgata tgaaaaacag ctcataacca taagcctatt gtcatattca
     4381 aattttaatg tgaatgtatt aaattttaaa ggcttggggg atggaggaac accctctcag
     4441 aacaaagggg agggggaata ggatgaagaa ttctaagagg gggtgctggg aggggggcaa
     4501 catttgaaat gtaaataaat aattaatttt aaaata
//
