LOCUS       NM_001145950            2864 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 5730409E04Rik gene (5730409E04Rik),
            transcript variant 1, mRNA.
ACCESSION   NM_001145950
VERSION     NM_001145950.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2864)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL606935.8.
            
            On Apr 3, 2023 this sequence version replaced NM_001145950.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.1117755.1,
                                           SRR14995048.1252544.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               AL606935.8         159298-159465
            169-2864            AL606935.8         161129-163824
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 60.9 cM"
     gene            1..2864
                     /gene="5730409E04Rik"
                     /gene_synonym="7530403E16Rik"
                     /note="RIKEN cDNA 5730409E04Rik gene"
                     /db_xref="GeneID:230757"
                     /db_xref="MGI:MGI:3609248"
     exon            1..168
                     /gene="5730409E04Rik"
                     /gene_synonym="7530403E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            169..2864
                     /gene="5730409E04Rik"
                     /gene_synonym="7530403E16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2841..2846
                     /regulatory_class="polyA_signal_sequence"
                     /gene="5730409E04Rik"
                     /gene_synonym="7530403E16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2864
                     /gene="5730409E04Rik"
                     /gene_synonym="7530403E16Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcagacgctg ctggactccg cagcccgggc tggggctagg gccgctgtgc ctggaccaag
       61 cagccgcgtc accacgcgtg cacgcgcagg tccaggaatc ccccaccctg cagcgagcag
      121 gacccgaggg accgtagcaa gccccgcagg agcgggcgcc tctaggcctc cagatgttcg
      181 ctgccatcca gccaggacta gcagaggggg cccagtaccc agggagcctg cctcctggag
      241 tatgccaacc agacctccaa ccagacaata actccaactt tgtggagagt gctaaggatg
      301 ccaataagaa ctggcatggt gtgccaggca aagtggatcc tattctgata aggagctcct
      361 ctgagtcacc ctctgataac caggtcttcc aagccaccag gctccctgag gccggagtcc
      421 gcagtccccc ggagggtgcg gagatccctg gtgctgagcc agagaagttg agcggtgcca
      481 gcagtgtctg ctctcctctg gaggacattg gctatgccag cagttccttg agcatcgaca
      541 gcttcagcag cagtccagaa cctgtctgcg atacccctcg aggtccgagc cctctggatc
      601 cccttctgcc ctccgtggcc caggccgtgc agcagctgca ggctcaggag cgctacaaag
      661 aacaggagaa ggagaaacac cacgcgcatt tggtgatgta tcggcgcttg gcgctgctcc
      721 agtggatccg ggctctgcag caccagttgg tcgaccagca ggcccgactg caagagagct
      781 ttgacaccat cctggacaac cggaaggagc ttatccgctg tctgcaacag agggaagcac
      841 cttgcaggca ccaggaccag ggctaagggt gtgcacaagt gtgtgtgcac aagtgtgtgt
      901 gtgcacaagt gtgtgcattt gcaggctttt gagtggttat acacaaggaa ggatgtgagt
      961 attagctggc atgtatgcaa gtaagcataa gtgaatatct atatgctaac atgtaagcag
     1021 gtatgtaagg catgtgtgtt tatgtatgca tgtgtggcta ggtacccagg aatgtgtata
     1081 tatattcctg aatgtagaga caaaagatat atatgcatgt gtatcagttt atatgtacag
     1141 gcttgtgttg ggtgtgtgtt gagacttaca cgttccagtg ctggcataag aaacatgtgc
     1201 taggaatgtg tgtgtttgca gagacttaag ggcaggtgtg tgtaaatgta tgttcaattg
     1261 cacctgcagg gcgtccaccc atctcctgtg ttcccaaagt ctaccccagc cttatattct
     1321 actgagtctc acctcccagc ttcctagaga tagaagcctc tcccactgtc atagatctga
     1381 gggctgtggc ctgttctcct gttctgaggg ctgtggctga cctgttctcc tgcagtttcc
     1441 caggctacct ttcctatccc ttcccctcca accttgctct aagaccactg tccctaatgt
     1501 tggcttgttc ctaagagttt tttttttttt tttaatttgg ggtggttgct ttttgtttat
     1561 tttgcttatt actgtacaag gaattgagcc cagagccctg tgcatgctag gcaaatgtcc
     1621 taccactgag ctgcacacct agccccggtt cagagattta ttggctgcac tggccttcct
     1681 gtgcacagga caatttgtgg agaattggtc tcaagggagg gaactggcac agtggcggag
     1741 gctgcagcag gggtgggagt ggagataaag aaagatataa gaaactgtcc tcttagctgg
     1801 gttctggtgg tgcacatctt taatcccagc actcaagagg ctgaggcaac tggaactctg
     1861 agttccagaa cagcctgggc tacagagtga gttcaaggac agccaggcta catatagaaa
     1921 cccaaaagaa agaaagagga gagagaaaga gagagagaga gagagagaga gagagagaga
     1981 gagagagaga gagagagaga gagagagaaa gggagggagg gaggaaggaa ggaaggaagg
     2041 aaggaaggga gggagggagg gagggaggga gggagggagg gtgggtgtgt tgttttgaac
     2101 cctgtctggc tcctctgtgg gaggtggcgg tgggagagaa tgactctggt agaactctgt
     2161 gaagaacagg agaattccca aaacaccatc ctgctccact gtgaggagag gccgaaagcc
     2221 atactgagtt aagtctgtag aatgggactg tgcatataag catgcagatc atgggccaga
     2281 tgcaccaagg ccacgggcag ttgggggacc tcccttctct tcacctttcc ctcctctgcc
     2341 tacgtcgctt tagcagcagt gaatgtcaga ttggtttggt tcatttttca gaatcggact
     2401 ttctggagaa gccagagctc agctttctaa gcagtcagag gacagggtca gtccagcttc
     2461 ccgaagctct taggacatgc ggcccctttg aacagggatt ggcaggccct agggaaggct
     2521 tcatgctgtg aggttgaatg tgtattgggt aggtcagtag ttaaggttct ggagcccttt
     2581 gttttgtttc tgggtgtcaa ggtaaggcag gatcctagtg ggtgaagcaa tgactcaaag
     2641 gaggagcagc agcaggtgac agggacagca cctgtgctgt gtctggcctc agtctcccca
     2701 tctgcaaagt ggggaccctt cccgcaccat ctccaaacag ttctatcctt gatgggaggg
     2761 taggtgaatt gtgagccctg gggactttta tagtacttgc atgttgaatg tgaatctggc
     2821 ctctgggccg atgcagcata aataaactaa gggagcaaat tcaa
//
