LOCUS       NM_001033273            6816 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 5031439G07 gene (5031439G07Rik), transcript
            variant 2, mRNA.
ACCESSION   NM_001033273 XM_128281 XM_901952 XM_901958 XM_911281 XM_921959
VERSION     NM_001033273.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6816)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6816)
  AUTHORS   Ling,K.H., Hewitt,C.A., Beissbarth,T., Hyde,L., Banerjee,K.,
            Cheah,P.S., Cannon,P.Z., Hahn,C.N., Thomas,P.Q., Smyth,G.K.,
            Tan,S.S., Thomas,T. and Scott,H.S.
  TITLE     Molecular networks involved in mouse cerebral corticogenesis and
            spatio-temporal regulation of Sox4 and Sox11 novel antisense
            transcripts revealed by transcriptome profiling
  JOURNAL   Genome Biol 10 (10), R104 (2009)
   PUBMED   19799774
REFERENCE   3  (bases 1 to 6816)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL513352.12.
            
            On Feb 14, 2019 this sequence version replaced NM_001033273.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK149782.1, AK170532.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164137
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-363               AL513352.12        236084-236446       c
            364-515             AL513352.12        208945-209096       c
            516-638             AL513352.12        204281-204403       c
            639-716             AL513352.12        204121-204198       c
            717-818             AL513352.12        203865-203966       c
            819-959             AL513352.12        202377-202517       c
            960-1151            AL513352.12        201605-201796       c
            1152-1314           AL513352.12        199087-199249       c
            1315-1473           AL513352.12        198026-198184       c
            1474-6816           AL513352.12        192411-197753       c
FEATURES             Location/Qualifiers
     source          1..6816
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 40.25 cM"
     gene            1..6816
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /note="RIKEN cDNA 5031439G07 gene"
                     /db_xref="GeneID:223739"
                     /db_xref="MGI:MGI:2444899"
     exon            1..363
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     CDS             300..1514
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="uncharacterized protein KIAA0930 homolog isoform
                     2"
                     /protein_id="NP_001028445.2"
                     /db_xref="CCDS:CCDS27715.2"
                     /db_xref="GeneID:223739"
                     /db_xref="MGI:MGI:2444899"
                     /translation="MLRAIAEERGRLSLRREVCGLGCFKDDRIVFWTWMFSTYFMEKL
                     APRQDDMLFYVRRKRAYPGNEGTIDGRKAEAEPEVEVEVYRRDSKKLPGLGDPDIDWE
                     ESVCLNLILQKLDYMVTCAVCTRADGGDIHIHRKKSQQVFASPSKHPMDSKGEESKMS
                     YPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRYEALKKVYD
                     NRVSVAARMAQKMSFGFYKYNNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPCGTEDSS
                     PASPMHERVTSFSTPPTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFRE
                     DDSGADLHNATNLRSRSLSGTGRSLVGSWLKLNRADGNFLLYAHLTYVTLPLHRILTD
                     ILEVRQKPILMT"
     exon            364..515
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     exon            516..638
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     exon            639..716
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     exon            717..818
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     exon            819..959
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1151
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     exon            1152..1314
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1473
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     exon            1474..6816
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1957
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /note="major polyA site"
     regulatory      2731..2736
                     /regulatory_class="polyA_signal_sequence"
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /note="hexamer: ATTAAA"
     polyA_site      2755
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
     regulatory      6709..6714
                     /regulatory_class="polyA_signal_sequence"
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /note="hexamer: AATAAA"
     polyA_site      6741
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /note="major polyA site"
     regulatory      6775..6780
                     /regulatory_class="polyA_signal_sequence"
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
                     /note="hexamer: AATAAA"
     polyA_site      6795
                     /gene="5031439G07Rik"
                     /gene_synonym="mKIAA0930"
ORIGIN      
        1 agtgctccgc tgtgctccga ggtcggcggt ggcgacggcg gcggcggcga cgcacacaaa
       61 agcggattgt ggcttcactg gtgctcgcgg cgggcggcag cggggcacgg gcggcggggc
      121 gtgtcggtgg cccccgcggg cgcggcgcgg gcgatgagcc ggggcccggc atggcctccg
      181 cgcggccgcc gggcagggcc tgtgcctcgg cgtccgcgcc cgcggggctc cgggctgggc
      241 cggccgcctc ccgggagtcc gtggacagca gcgaagcgga ggagcgctcg ttgcagcaca
      301 tgctgcgcgc catagccgag gagcgcggac gccttagcct gcgccgtgag gtctgcggcc
      361 tgggttgctt caaggatgac cgcatcgtct tctggacgtg gatgttctct acctacttca
      421 tggagaaact ggctccccga caggatgaca tgctcttcta cgtgcgcagg aagcgagcct
      481 acccaggcaa cgagggcacc atcgatggga ggaaggctga ggctgagcct gaggtggagg
      541 tagaagtgta ccggagagac tctaagaagc ttccgggcct gggagatcct gacatcgact
      601 gggaggagag tgtctgcctg aacctcatcc tgcagaagct ggactacatg gtgacctgtg
      661 ctgtgtgcac gcgtgccgat gggggtgaca tccacatcca caggaagaag tcccagcaag
      721 tgtttgcctc ccccagcaaa caccccatgg acagcaaagg agaagagtcc aagatgagct
      781 accccaacat cttcttcatg attgacagct ttgaggaggt gtttagtgac atgaccgtgg
      841 gggaaggaga gatggtctgc gttgagctgg tcgccagcga caaaaccaac acgttccagg
      901 gtgtcatctt tcagggctcc atccgatacg aggcactcaa gaaggtgtac gacaaccgcg
      961 tgagcgtggc tgctcgcatg gcccagaaga tgtcatttgg cttctacaag tacaacaaca
     1021 tggagtttgt gcgcatgaag gggcctcagg gcaagggcca tgcagagatg gcagtgagcc
     1081 gagtgtccac cggtgacaca tccccctgtg ggaccgaaga ttcaagccca gcttcgccca
     1141 tgcatgagcg ggtgacctcc tttagcaccc cgcccacccc agagcgaaac aaccggcctg
     1201 ccttcttctc cccgtccctt aagaggaagg tgccacggaa ccgcatcgcc gagatgaaga
     1261 aatcacactc agccaacgac agcgaggagt tcttccgaga ggacgacagt ggagccgacc
     1321 tgcacaatgc caccaacctg cgatctcggt ccctgtctgg cacaggacgg tccctggtcg
     1381 ggtcctggct gaagctaaac cgagctgatg ggaacttcct tctctatgca cacctgacct
     1441 atgtcacttt gccgctgcat cggatcttaa cagacatcct ggaagtacgg cagaaaccca
     1501 tcttgatgac ctagtgtgtg tggagcctgc acggagcccc ggccctgcct ggccctggga
     1561 atgctgccaa gtgcctacct gtcaccgcca accggggtct tctgtgacaa gccagcaccg
     1621 gagctacagc caggcagggc cactcgactc ccggggccag ggccgactcc atgaacacca
     1681 gcccaaactg aagtgcctcg tcctccctcg ctggctctgc tcccaccctg tgcccgcgct
     1741 cagccccctc tgcctatctg agagccttct gctcccaaag agggccagag acaccaagag
     1801 atcatagaga gcgtgagggg ctgccagctt ccagaatgtt cttagacctc ccaacctcgg
     1861 ctcccgtacc cctgctgggg ctctgtgccg agcaactgtc cacgcatcct acacaaagcc
     1921 agtggaaggt tttgtaatgc agtactgacg aacttcagct cgagagtcgg tcccaacttg
     1981 ttcccccaga gttcttgtca cagtgggtcc cagctggggg tcaggggaca tgagctgttt
     2041 gtcagctggg aatacctcgc cctatgccca gctccagaat gggtctcaac ccccagctgg
     2101 gcagacagtc cccgatcccc cagaatggcc tttgcttcca tccaaagaac accgccaaca
     2161 cacacacctc cgaccccgag acgtcctgcg ttgatctcgg ctctccggag ggacgcagaa
     2221 ttcggttctg aaggaaagtg ggagggtact tctgctgagg gatgtctgat ggggacccgg
     2281 gtggaaccct ctcgggaagg ttgtaggcag aaccaccctg gggccagagc ttagagcgag
     2341 gctggtgctg tcccctttgc cccgtgcttt ggtcagcatg ctggtcttgt cttcagcctg
     2401 gctttctagg cagagaggag accaggcttc ttatgagtct gcattgtcct cagtgggtgc
     2461 aagaggccat gtgggtcatc agcccatgcc tcaccctggc agtgtgctct aactgaggcc
     2521 tcctctaccc aactggaata aactggaagc tgagcctcct gttgctgctg ggtctagtgc
     2581 cccagatcca gagaactcag ctgtgtatgt cgagctcagc ccctctgggt tggagagcag
     2641 gcttgggagc gtggctcctg tctggctcca ttccttggtc tctgggagtg ggcactactt
     2701 tggggctttc tccagatttt gtatgttgtt attaaaagcg agctattgca tttcattctg
     2761 cctcagtttg cccacctgta aaatggggct gataccacct acctcactga agtggccagg
     2821 gttcaagtgc atggctgggt cagggtttgc tcacctgtca ttcttcatag ctcggttggg
     2881 tcttagctgt taggcagtga ggtagcttgc ctctcctgcc tgctctgaaa taactccttc
     2941 caaaagcacg gacgagtagt gtaagcttag acactggtac tgtgctggag cctgggtcct
     3001 gatgctaatc taaccatcac agcagattca catcctgttc cggaatgcca gagtacctca
     3061 ggtttatggg tgtggccctc ctttctagga tagccattcc tcctgtaggg catgtgaatg
     3121 ctgtccccac agttgtatct agggaggtca cagggcctgc cacttcagga acctggccat
     3181 tctgtggtct gaacacaggg gaaatatatc ttaggggaaa tatagcttag tgtggcttct
     3241 gtggaagact gaggcagtct agggctcatt gtaattccat ggcttctctt ctgggtgttc
     3301 cctctagcag agctcagcca tactctcttg gctggaccaa ctgtgagtac aagcacttcc
     3361 caggctgtcg gaaggtccag ggtctgtgtc acaccccttg actctgtgtg gcactcaagc
     3421 atactgatcc ccgctcaggt accaccattc cctatgtaga ggagggaagc accctagaga
     3481 cactgtacag cggcaggagg caagcttggt ctgcgcccca gcctatggtt tgaaccatac
     3541 ggctgtcccc aagtacacaa ctagacattt atttggtcgc atttcctctt tctccagagg
     3601 gcacttttga gttccaaaca tgttcagagg ccccttgaga actgggttag gattctgaca
     3661 tcagagggca tgacatggtg gcacttgtgt gcaatcctag ccctggtgcc gaggcaggag
     3721 gatagtttct ggatagcctg ggctacttag caagaccctg tctcaaagtg acaaatgaca
     3781 gcagaagcac ccagaatcct ggggatgaca gtttggcttc tagggctgtc actgattttt
     3841 cttggggaca tgtctgttct cacacaacac agggtgacaa ggaacaactg gaattcaagt
     3901 acagttgtgt tctgcgaaaa cctaggtcca gtcttcaaga cactaagaaa cctttgtgtc
     3961 ccttagagga ggcattcctg tttgttcagg tagcatccat cttgcctcct gggatcttgc
     4021 tagcatccag actgcctaca gtgaggtagc ccaggctcat taccccccaa aggattatta
     4081 ttgaaaacac aggcaaaaaa taaatacact aggcatggtg gcagcctggt ctacatagca
     4141 agttcgggat agccagggct atagagtgag acctgtctca aaaaaaattt tcctgtgtat
     4201 ttagttggtc cagtctagtg tgtgtgtgtg ttcatattca taagttttaa atttctggtc
     4261 taaactctgg atgtactgag ttttaggtcc tgtccgtttt tcacattggc tgtttttttc
     4321 tcactttaaa atctgagtat cttaacatca ccccgtcaca cagcttctct gtttaggttc
     4381 ccttaccttt gtatcattaa gtaggactgt ccctgtggac acggtgaccc taaaaagtaa
     4441 atagaacact caaaagggac gtgaatgtgc aggtaccatg ggtctggggt gacctgcttc
     4501 acagaagtca ccgaccttgg catggtagct actgccttct gtgtctggac ctgaagagtg
     4561 gagctggggt ctggagacct cgtgtaaata tcttgagctt gaaccaaaag tagcctcttg
     4621 gggcatctgc attggccctt ccagggagga agtcagaatg ctgccctgtc cttctaggtg
     4681 aggagtggtg agtagatact gacacgcacc tccaaacctt tctctgagcc cctgggacca
     4741 gcagccaggg ttagaatatc acacaagcta agtgatttga tagcctgtgg ctggggtgga
     4801 gatctgagtt ctgtaacagg gagagcccca caagtggagg aagccatgga gttcggtgtt
     4861 tatctacttc caaggtgact tcaggccatg agttgccaat cgggctctct gttgtttttg
     4921 agacagggtc tctatagccc atgctggctt caaacttact gtacacagag ggtgatcttg
     4981 aactcatgac cctcctttca cttccatgtg ttggtgttaa cagggttcca ccaccatgcc
     5041 ggttttatgc tgtgctaggg gtaaaaccca gggctttgtg ccactgggca agcactctca
     5101 tcatctgggc tgctcccctc agctttctta ccttctgttg acctcagccc ctccctttgt
     5161 agatcaggac acttgatgca aatagcagtg ttctttcttt caaaattgtt acatgagaat
     5221 ttacacttac aaaaatgttt tgttttgcta cttcaaaact tctgatttct acaaaaaaac
     5281 atttcaatga agacatgagg tagcacacat agaatgtgtt agtgtgcgaa ttatgagtgg
     5341 ctttcccttg aacacccata cccaacagaa ggccagcctc tcaaggcagg cttagtggtg
     5401 gctgttgact ttgtgattcc atctttcttt gagacattgc attatatttt agagacattt
     5461 caagtgaatt ttcttttaaa tgcccccatc tttaatacat gtttcacatt aatacaaaca
     5521 aatagcaaat caagggaatg accttgactt tgataacatt atgaaatggt atcctctggg
     5581 gctgacagac gccataccac atactggttg gtctgtgaag accctgtgag agggatagtg
     5641 accaccctag ccagagtgtg ggcatttcca aagctgacca catgatatat tttgggctcg
     5701 gttctgtgct cccatgaaaa tacaccctgg cagtatttgg actgcaaact ctcaaagctt
     5761 ttctaagaga accccctaaa aaccatcaca gtagcaggaa gatggctgga atagaagttg
     5821 ggacccaaaa tgggagttca gaaaagatcc tggcaggcat ctgactttcc ttgttgcgga
     5881 gctcctctgc agtgggggtg agaggtgggg gaagggggga gcatggaggg tgagatcatc
     5941 tggctggctc tttctagggc ctgtaatcat cacgggtcag aaatatagcc accttccatg
     6001 caaatgggtt tctaaaacat gccaaatgac ttatgtcaca aagaataggt cctaatatac
     6061 tgtatacccc ggggttagac ctgcagtgga gacagagaaa gggagactga ggggacatat
     6121 agtaaggagc cagtcactac cctaggaaca ccagaccagg agggtttttc tgaactgcta
     6181 caactacaag gaggtgggaa ggaggcagcg gcttggcagg aaacccatgc ccccttgcta
     6241 tccacatcac tgggtagccc tttcaagtgg cctgaagcct ctgctctgga agctggctgc
     6301 cctgctggcc ttccgtctcc cagctgcctt gggagggcag ttctgctctc aggtctttta
     6361 tcctgactca tacatacctg taaggagccg ctgtcagcct ggaagagaat gttccccgga
     6421 aaggaaaacc ttccagaacg tatgtagaag agaggagtgt aaaataatgc agtctctgta
     6481 gctcactgta tatgcccatg tcaactggag acatcagact ttgtgcttgt taaagggaag
     6541 gaagctggga aatgtgagga aggagaagct tgctttgggg atgggcgatg aatgttcctg
     6601 ttcttaagtg tcactcactt gcctcctaca gcctcatgga agccagtggg ccatcaaaac
     6661 ttttctctct tctatgtgga tggctctttc attttggact ctgactttaa taaagcaatt
     6721 aggttgctca gtttgaaata accattgttt ctggtgaact ttgattatat tttgaataaa
     6781 caattttact caaaagactt aagccaattc tagaaa
//
