LOCUS       NM_001199485            2653 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RIKEN cDNA 4931406C07 gene (4931406C07Rik), transcript
            variant 2, mRNA.
ACCESSION   NM_001199485
VERSION     NM_001199485.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2653)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2653)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2653)
  AUTHORS   Rutledge,E.A., Benazet,J.D. and McMahon,A.P.
  TITLE     Cellular heterogeneity in the ureteric progenitor niche and
            distinct profiles of branching morphogenesis in organ development
  JOURNAL   Development 144 (17), 3177-3188 (2017)
   PUBMED   28705898
REFERENCE   4  (bases 1 to 2653)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   5  (bases 1 to 2653)
  AUTHORS   Shalom-Barak,T., Zhang,X., Chu,T., Timothy Schaiff,W., Reddy,J.K.,
            Xu,J., Sadovsky,Y. and Barak,Y.
  TITLE     Placental PPARgamma regulates spatiotemporally diverse genes and a
            unique metabolic network
  JOURNAL   Dev Biol 372 (1), 143-155 (2012)
   PUBMED   22967998
REFERENCE   6  (bases 1 to 2653)
  AUTHORS   Lin,Q., Donahue,S.L., Moore-Jarrett,T., Cao,S., Osipovich,A.B. and
            Ruley,H.E.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
REFERENCE   7  (bases 1 to 2653)
  AUTHORS   Chu,R., Lim,H., Brumfield,L., Liu,H., Herring,C., Ulintz,P.,
            Reddy,J.K. and Davison,M.
  TITLE     Protein profiling of mouse livers with peroxisome
            proliferator-activated receptor alpha activation
  JOURNAL   Mol Cell Biol 24 (14), 6288-6297 (2004)
   PUBMED   15226431
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY118027.1, AK147073.1, AK016432.1 and CK384052.1.
            
            Transcript Variant: This variant (2) has a different 5' UTR
            segment, compared to variant 1. Variants 1, 2, and 3 encode the
            same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK147073.1, AK088123.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                BY118027.1         1-32
            33-1269             AK147073.1         7-1243
            1270-1825           AK016432.1         1129-1684
            1826-2650           AK147073.1         1799-2623
            2651-2653           CK384052.1         491-493
FEATURES             Location/Qualifiers
     source          1..2653
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 4.76 cM"
     gene            1..2653
                     /gene="4931406C07Rik"
                     /note="RIKEN cDNA 4931406C07 gene"
                     /db_xref="GeneID:70984"
                     /db_xref="MGI:MGI:1918234"
     exon            1..131
                     /gene="4931406C07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            132..278
                     /gene="4931406C07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             224..1171
                     /gene="4931406C07Rik"
                     /note="isoform 1 is encoded by transcript variant 2; ester
                     hydrolase C11orf54 homolog"
                     /codon_start=1
                     /product="ester hydrolase C11orf54 homolog isoform 1"
                     /protein_id="NP_001186414.1"
                     /db_xref="CCDS:CCDS22835.1"
                     /db_xref="GeneID:70984"
                     /db_xref="MGI:MGI:1918234"
                     /translation="MACSEFSFHMPSLEELAEVLQKGLTDNFADVQVSVVDCPDLTKE
                     PFTFPVRGICGQTRIAEVGGVPYLLPLVNKKKVYDLNEIAKVIKLPGAFILGAGAGPF
                     QTLGFNSEFMPIVQTASEHNQPVNGSYFAHKNPADGACLLEKYSQKYHDFGCALLANL
                     FASEGQPGKVIEVQAKRRTGELNFVSCMRQTLEEHYGDKPVGMGGTFIVQKGKVKAHI
                     MPAEFSSCPLNSDEAVNKWLHFYEMKAPLVCLPVFVSKDPGLDLRLEHTHFFSHHGEG
                     GHYHYDTTPDTVEYLGYFSPAQFLYRIDQPKETHAFGRD"
     exon            279..377
                     /gene="4931406C07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            378..451
                     /gene="4931406C07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            452..553
                     /gene="4931406C07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            554..730
                     /gene="4931406C07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            731..880
                     /gene="4931406C07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            881..997
                     /gene="4931406C07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            998..2652
                     /gene="4931406C07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2631..2636
                     /regulatory_class="polyA_signal_sequence"
                     /gene="4931406C07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2652
                     /gene="4931406C07Rik"
                     /note="major polyA site"
ORIGIN      
        1 tccgggaggg gcggtacccc ggctctccct tggcctagag ctatcagaaa agactggcag
       61 gagactaaac ctgtgttcga acctgagtgg aaagaaggcc ttcctgcaag tgggaggaca
      121 ctgcgggcca gagccgggac tgttcctgct ggtgccccgt gagctctcgt ggtggtcagc
      181 caacagctgc ggtgtctgag cagccttgct gagaggaagg agaatggctt gcagtgagtt
      241 ttcctttcac atgccaagtc tggaggagct tgctgaagtt ttgcagaagg ggctaactga
      301 caactttgct gatgtccagg tctcagtggt tgactgccca gatttaacaa aggagccatt
      361 tacctttcct gtaagaggca tctgtgggca aactagaatt gcagaagtag gaggtgtgcc
      421 ttacttattg cctcttgtaa acaaaaaaaa agtttatgac ctaaatgaaa ttgcaaaagt
      481 aataaagctg cccggagctt ttatccttgg agcaggggca ggtccatttc agacgcttgg
      541 gttcaattct gagttcatgc caattgttca aacagcaagt gaacacaacc aacctgtgaa
      601 tggaagttac tttgcccata aaaaccctgc agatggagcg tgcctgctgg agaaatacag
      661 ccaaaaatat catgattttg gatgtgcact actggctaat ctttttgcca gtgagggcca
      721 acctggcaag gtcattgaag tgcaagccaa gagaagaaca ggagaactta actttgtgag
      781 ctgcatgaga cagacactgg aggagcacta tggtgacaag cctgtgggga tgggaggcac
      841 cttcattgtg cagaagggga aagtgaaagc ccacatcatg cctgcagagt tttcttcctg
      901 cccactgaac tcggacgaag ctgtcaataa atggctacac ttctatgaga tgaaggctcc
      961 cttggtttgt ctaccagttt ttgtttccaa agaccctgga cttgatttgc gactggagca
     1021 cacacatttc ttcagtcatc atggagaagg tggacactac cactacgata cgaccccaga
     1081 cacagtggag taccttggat acttctcacc tgcacagttc ctctatcgca ttgatcagcc
     1141 caaagagacc catgcctttg ggagagatta aagcagctgt gtaatggtta gctaaggtta
     1201 agttactaac ccagcagctg atagtaattc aaaaatacag tagaggacca gagaggggcg
     1261 gggggggggg cggggagaaa gagaggaaga ggaagagaga gagagagaga gaggcattcc
     1321 ctagcaagca gccaaggccc taccttaatc cccagcacag ctaataaaat taatcactac
     1381 acaaacacta tttttatggc atttgaaatg caaggatgtg gacatatgac actcatatta
     1441 ccatattatt taacatcttc atgtgagggg agcgtattgg gaacatagat agctaattga
     1501 gatgctcact ttagtaaacc aatcttctgt ctttatagcc cagcaaagtc taccttctct
     1561 tcataccaca gatatgaata tggacaggga ccttccatta ttcctgctat ctaggaataa
     1621 cttacatttg ggtggcatta ctaaattttt caagttcatc tcacaagggc taagggagta
     1681 ttagacacaa cagtgtggga tctttgcact gagttttaaa agcccactgt ggaaatcagt
     1741 gcactacgtt ctcagcactc aggactaccc acactcagaa gtctgcagtt gccttccaca
     1801 gatgttagta gcattgatga gccaggctcc gcctgaatta ggtctctacc caacagtttg
     1861 taccttcgta atactgtttg caagataaga aagaaaagaa acagcaacaa aacacaacac
     1921 ctaacatggc cactccccat catgagatat aaaactaccc tcttattatg tggtgtctta
     1981 aagagacact tttgtgccct ttctttggct atatagactg ttgagacagt gaaccacaag
     2041 aaattggaat tccctcagga atttcatggc aggagaagga aaaggctgaa gcctggtgcc
     2101 agccagagga ggaacttgtc ttctggaaag atgtcacgta cctctcagga caaacaggaa
     2161 cccagacaac agtggtgggc aggaccacag cttgatctgc ttagttaggt atacctcgtg
     2221 ccttctattt aaacctgaac ctcatgccag gacccagcat gaattctgca ggatggtggg
     2281 ggaggggtgg gaatccagag acctgtttat tcctcttccc aaagtgacta cattcaagga
     2341 atctttttgt gcttttcaaa ggatattaca ctattactga gcgctgatgg ctagcatatg
     2401 gtgatgatgg ttagaaaact ccttgctgtt ctgtgtcata gaacctgtga tgatcattag
     2461 ccagaaatca actttccaac cttcccaatg gcaataagat gtgggtctag gaactcttta
     2521 gaactaagcc ctaaacgttt tctgattctt tactttgtaa tgcacatgtc ttgtattatt
     2581 tttaataata gtgttatttt taattaaaca tgatttttga ggtgaaactg aataaaatca
     2641 cttaatactg tta
//
