LOCUS       NM_001374685            1529 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus RIKEN cDNA 4930579F01 gene (4930579F01Rik), transcript
            variant 3, mRNA.
ACCESSION   NM_001374685
VERSION     NM_001374685.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163628.5 and AC131122.4.
            
            Transcript Variant: This variant (3), as well as variant 2, encodes
            isoform 2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.125820.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-237               AC163628.5         169656-169892       c
            238-327             AC131122.4         3676-3765
            328-534             AC131122.4         8364-8570
            535-599             AC131122.4         12592-12656
            600-743             AC131122.4         15553-15696
            744-825             AC131122.4         17361-17442
            826-1027            AC131122.4         18431-18632
            1028-1071           AC131122.4         26294-26337
            1072-1529           AC131122.4         27619-28076
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 64.1 cM"
     gene            1..1529
                     /gene="4930579F01Rik"
                     /note="RIKEN cDNA 4930579F01 gene"
                     /db_xref="GeneID:67741"
                     /db_xref="MGI:MGI:1914991"
     exon            1..237
                     /gene="4930579F01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            238..327
                     /gene="4930579F01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            328..534
                     /gene="4930579F01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            535..599
                     /gene="4930579F01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            600..743
                     /gene="4930579F01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             639..1241
                     /gene="4930579F01Rik"
                     /note="isoform 2 is encoded by transcript variant 3"
                     /codon_start=1
                     /product="uncharacterized protein C4orf17 homolog isoform
                     2"
                     /protein_id="NP_001361614.1"
                     /db_xref="GeneID:67741"
                     /db_xref="MGI:MGI:1914991"
                     /translation="MCSAAAFQSSDAMSNRMDGNENTVHIPNYLDQEIKILAKLSEIL
                     HTDSLAEVLNWLLQASNKEKEWVSALVHSELAEINLLTRHRANTPTEPAAEPRKPYTS
                     GTPTTKLLQNSRAKLKALTGSRERQLHRTSSQGSKGNKLVSHGAETPLFIRRNKKQTP
                     VTEYLNPESPLGSNSVASRSPNPGSARSAQGYSPQRVFYP"
     exon            744..825
                     /gene="4930579F01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            826..1027
                     /gene="4930579F01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1071
                     /gene="4930579F01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1529
                     /gene="4930579F01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1507..1512
                     /regulatory_class="polyA_signal_sequence"
                     /gene="4930579F01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1529
                     /gene="4930579F01Rik"
                     /note="major polyA site"
ORIGIN      
        1 acaaccaggg aggcaggcac ctggacccat tggagtgtga gtgggagaaa ctgaagagac
       61 accgctttgc tcttttggag gcatcagaca gtcagctgtt tccatcgata aaatctcctt
      121 aagtccgaga tttaaggaaa taacaaaatt cagccgagac ccaatatgag gctggaaggc
      181 catcggcaga cctgagcttc tatcagttaa attatctgct tttaaagccg ttctcagagt
      241 acaaagccag acacgtgatg gagagtgtcg gaggctgctt tatagtcagg cacacgcctc
      301 atcccagaag agtttgtcac atccaaggtt tgaacaacat cccaatctgc accgtgaatg
      361 atgatgacac atgtcccaga tcgctgtata tctctgacca gtttagccct tccgagagga
      421 atgagacctc agtagcaaaa ttcactaacc ctcccagcac cgcatcccca gaaagcctga
      481 gagtgggagg actgtcacca gccccagcca aactgcctgc caggcctcag tcggagccat
      541 gtagaaaatc cagccagtgc ttcaagactt ccaaagacaa tcccttggtg aaaaataagg
      601 ttgaacataa agctaaaagg ccactcccat ctgcaaggat gtgctctgcc gctgccttcc
      661 aatcctcaga cgcgatgagc aacagaatgg atgggaatga gaacaccgtg cacattccca
      721 actacctgga tcaggagata aagatcctgg caaagctctc tgaaattttg cataccgact
      781 ctctggcgga ggttctgaac tggctgcttc aagcaagcaa caaagaaaag gaatgggtat
      841 cagctctggt tcattctgag ctagctgaga taaacctgtt gactcgccac agagcaaaca
      901 ccccaacaga accagcagca gagcccagga agccgtacac ctccggaaca cccacaacca
      961 aactgctgca aaactcacgt gcaaagctga aagcgctgac tggatctaga gagcgtcagc
     1021 tacacagaac gtcaagtcaa ggatccaaag ggaacaagct ggtgtcacac ggggctgaga
     1081 caccactgtt tataagaaga aacaagaagc aaacacctgt tacagaatat ctcaatccag
     1141 agtctcctct agggtccaac agtgtggcga gcagatcacc aaatccgggg tcagccagga
     1201 gtgcacaagg ctacagccct caaagagtgt tctatcctta acacagcaaa ccagggtcag
     1261 ccaggagtgc gcaaggccac agccctcaaa gagttttcta tgcttaacac agcaaaggta
     1321 gagatgagtg ctgggtggtt ctttcacaaa gatgggcttc acactgacag aacatcaaag
     1381 taatttttaa aataaccaac ccgtcctcta tatggtggca catgtctcaa aaacacttac
     1441 atatagtgct agaaataaat attagcgaag actatttcta tttgtagcta gttttaatac
     1501 ttatggaata aatgtttatt taaatgcca
//
