LOCUS       NM_029463               1244 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 4930568D16 gene (4930568D16Rik), mRNA.
ACCESSION   NM_029463 XM_130220
VERSION     NM_029463.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1244)
  AUTHORS   Park,S., Shimada,K., Fujihara,Y., Xu,Z., Shimada,K., Larasati,T.,
            Pratiwi,P., Matzuk,R.M., Devlin,D.J., Yu,Z., Garcia,T.X.,
            Matzuk,M.M. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched
            genes are dispensable for male fecundity
  JOURNAL   Biol Reprod 103 (2), 195-204 (2020)
   PUBMED   32561905
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL929199.11 and AL773523.4.
            
            On Nov 8, 2022 this sequence version replaced NM_029463.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK016248.1, BY715860.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-105               AL929199.11        15304-15408         c
            106-191             AL929199.11        13873-13958         c
            192-227             AL929199.11        12428-12463         c
            228-275             AL929199.11        9994-10041          c
            276-413             AL929199.11        3182-3319           c
            414-1123            AL929199.11        2001-2710           c
            1124-1244           AL773523.4         198283-198403       c
FEATURES             Location/Qualifiers
     source          1..1244
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 23.57 cM"
     gene            1..1244
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /note="RIKEN cDNA 4930568D16 gene"
                     /db_xref="GeneID:75859"
                     /db_xref="MGI:MGI:1923109"
     exon            1..105
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            106..191
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..1071
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /EC_number="2.4.1.87"
                     /note="N-acetyllactosaminide
                     alpha-1,3-galactosyltransferase-like 1"
                     /codon_start=1
                     /product="N-acetyllactosaminide
                     alpha-1,3-galactosyltransferase-like 1 precursor"
                     /protein_id="NP_083739.1"
                     /db_xref="CCDS:CCDS50575.1"
                     /db_xref="GeneID:75859"
                     /db_xref="MGI:MGI:1923109"
                     /translation="MQYKKEALLLMLFAVLLALTQRFSYSRTKDHLQKMYACWKDHLE
                     EPHLSTWFDPKKRPDVIATTGWLAPVLWEGTYNREVLEQYYKRLNITIGLAVFATGNF
                     SKEPLRRFIKSADKYFMVGYNVIFYILADSTYNLPYFELGPLRTLKTWRLFEEEMCQD
                     CNLRNMNNMHSKIIQCIQYEVNFLFMMAVNQTFKNNFGVETLGKSVAQLHAWWYFKKP
                     RDFPYERRTKSAAFIPFEKGDFYYHRAIVGGTPLNVLNLIEQYIKGITDDNTNKLVST
                     FESHLNKYFFINKPARVLSPEYNWDPRFKTPPEIKHIKIAWKP"
     exon            192..227
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            228..275
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            276..413
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            414..1244
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1216..1221
                     /regulatory_class="polyA_signal_sequence"
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /note="hexamer: AATAAA"
     polyA_site      1244
                     /gene="4930568D16Rik"
                     /gene_synonym="Ggta1l1"
                     /note="major polyA site"
ORIGIN      
        1 gtgacgtcac catgagagaa aactccggca acagaaggat accacacaat acctgagctg
       61 gtattttttt tcctgccatt cctctttaca ttatcaaaac taaaggaagg aatgcagtat
      121 aaaaaagaag cactgttgct aatgctgttt gctgtattgc tggcactaac tcaacgcttc
      181 tcctactcca gaacaaagga tcacctacag aagatgtatg cctgctggaa agatcactta
      241 gaagaacctc atctctccac ctggtttgat ccaaaaaaac gtcctgatgt tatagcaaca
      301 actggttggc tcgctccagt cttatgggaa ggaacttaca acagagaagt tctagaacaa
      361 tattataaga gactgaacat taccataggc ttggctgtct tcgctactgg aaacttttca
      421 aaagagcccc tgagacgctt cataaagtct gctgataagt acttcatggt gggctacaat
      481 gttattttct acatattggc tgacagcacg tacaatctac catactttga gttgggtcct
      541 cttcggacac ttaaaacatg gaggctattt gaggaagaga tgtgtcaaga ctgtaatctc
      601 agaaacatga ataacatgca tagcaaaatc atacagtgta tacaatatga agtcaacttt
      661 ctcttcatga tggctgtgaa ccagaccttc aagaacaact ttggagtaga aaccttgggc
      721 aaatctgtag ctcaactcca tgcatggtgg tattttaaaa agcccagaga cttcccctat
      781 gagagaagaa ctaaatctgc agctttcatc ccctttgaaa aaggagattt ctattaccac
      841 agggccattg ttggcggcac acccctaaac gtcttaaatc taattgaaca atatataaag
      901 ggaattacag atgacaacac aaataaactt gttagcacat ttgaaagcca cctaaataaa
      961 tattttttta tcaacaaacc cgctagggtg ttatcaccag agtacaactg ggacccaaga
     1021 tttaaaactc ctccggaaat caagcacatt aagatagctt ggaaaccata aatcatacta
     1081 tggttgtgcc ctggggttta tgaaatcaca agtaaatacc agggaattcc tcaaaaataa
     1141 aactctggag agcttacaca agtgtgtaat ctttcagaat aaattgtctt tgaaattata
     1201 attctcctta gtctaaataa aagtaactcg ataagtattg ccta
//
