LOCUS       NM_001204904             980 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RIKEN cDNA 4930558K02 gene (4930558K02Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_001204904 XM_003084458 XM_003084459 XM_003086164 XM_003086165
VERSION     NM_001204904.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   3  (bases 1 to 980)
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF105154.1 and AC120180.19.
            
            On or before Mar 16, 2011 this sequence version replaced
            XM_003084459.1, XM_003084458.1, XM_003086165.1, XM_003086164.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF105154.1, SRR5189679.178646.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-574               CF105154.1         1-574
            575-980             AC120180.19        59477-59882         c
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="CD-1"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 69.95 cM"
     gene            1..980
                     /gene="4930558K02Rik"
                     /note="RIKEN cDNA 4930558K02 gene"
                     /db_xref="GeneID:75368"
                     /db_xref="MGI:MGI:1922618"
     exon            1..151
                     /gene="4930558K02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..679
                     /gene="4930558K02Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="uncharacterized protein C1orf105 homolog isoform
                     1"
                     /protein_id="NP_001191833.1"
                     /db_xref="CCDS:CCDS56649.1"
                     /db_xref="GeneID:75368"
                     /db_xref="MGI:MGI:1922618"
                     /translation="MEKRELKAFVPKFDKIPWLSEASLVNKPLILSIPRRYHSSFVLT
                     SYKKDMYLPHLLENPDFLSKARKNEHENLSPRNKQLCATCRGYQKVKTVQPKTFIIPD
                     HQKPPSQNSVNHREVSLHSQVQQLNSYNDIPTESISYRLPILGPRTAVFHRLLSSAYE
                     NPRDTQHRAFPRKKGMSKTVKQ"
     exon            152..237
                     /gene="4930558K02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            238..322
                     /gene="4930558K02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            323..406
                     /gene="4930558K02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            407..474
                     /gene="4930558K02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            475..533
                     /gene="4930558K02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            534..980
                     /gene="4930558K02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      874..879
                     /regulatory_class="polyA_signal_sequence"
                     /gene="4930558K02Rik"
                     /note="hexamer: TATAAA"
     polyA_site      900
                     /gene="4930558K02Rik"
                     /note="major polyA site"
ORIGIN      
        1 aaagtatgga ggggtctccc acctgctttg gtgcctaacc aagaggtact gtagcagtct
       61 ccccttgaca gcacaaagag gtatctgtgt tctccagttc ccagctcaaa aaactgagaa
      121 cacctgagag atggaaaaaa gagagctaaa ggcttttgtt ccaaagtttg acaagattcc
      181 ttggctgagt gaggccagcc tggtaaacaa accattgatc ctgagcatcc ccagaaggta
      241 ccactcctcc tttgttctga cttcgtacaa gaaggatatg tatttgccac acttgcttga
      301 aaatccagac ttcctatcaa aggctagaaa gaatgagcat gaaaacctgt cgcccagaaa
      361 caagcaactg tgcgctacat gtcgaggata tcaaaaagtg aaaacggtac agccaaaaac
      421 tttcataata cctgaccatc agaaaccacc ctcccagaat tctgtgaatc acagagaggt
      481 gagccttcat tcgcaagtgc agcagttaaa ctcctacaat gatattccaa cagagagcat
      541 tagctacaga ctgcccatct taggtcctag gactgctgtc ttccacaggc tcctgtcaag
      601 tgcctatgaa aatcctcggg atactcaaca ccgtgccttt cccagaaaga aaggaatgag
      661 caagacagtg aagcagtaag tgagtggcca gagctcatta cccccccccc aaacactcag
      721 ggacaaggcc acttctccaa gacagtttct gacactggta ccttccccta atcatgtatc
      781 tcccaaaaga tgagtaactt tttccttccc atgtgctgct cttctagctc ttaccacttc
      841 ctcctaaaga taacatgatt tactttacat aactataaag acttattgac taacaaagaa
      901 catgcttagt gtacctcatg ttgttttgct gaagttttta atgcatgtta cattataata
      961 aatgacagcc ttctttttat
//
