LOCUS       NM_001384245            1988 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus RIKEN cDNA 4921528I07 gene (4921528I07Rik), mRNA.
ACCESSION   NM_001384245
VERSION     NM_001384245.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1988)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 1988)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 1988)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   4  (bases 1 to 1988)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5  (bases 1 to 1988)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   6  (bases 1 to 1988)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   7  (bases 1 to 1988)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC166112.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.191900.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                AC166112.2         33930-34027
            99-169              AC166112.2         36309-36379
            170-194             AC166112.2         37219-37243
            195-308             AC166112.2         39721-39834
            309-373             AC166112.2         43127-43191
            374-398             AC166112.2         43875-43899
            399-512             AC166112.2         46262-46375
            513-583             AC166112.2         48607-48677
            584-608             AC166112.2         49225-49249
            609-722             AC166112.2         50868-50981
            723-793             AC166112.2         71589-71659
            794-818             AC166112.2         72371-72395
            819-932             AC166112.2         74182-74295
            933-964             AC166112.2         87129-87160
            965-989             AC166112.2         87898-87922
            990-1103            AC166112.2         89641-89754
            1104-1165           AC166112.2         96451-96512
            1166-1187           AC166112.2         97217-97238
            1188-1301           AC166112.2         102317-102430
            1302-1369           AC166112.2         106885-106952
            1370-1394           AC166112.2         107404-107428
            1395-1435           AC166112.2         108861-108901
            1436-1460           AC166112.2         109321-109345
            1461-1532           AC166112.2         109562-109633
            1533-1589           AC166112.2         110489-110545
            1590-1720           AC166112.2         111939-112069
            1721-1988           AC166112.2         112996-113263
FEATURES             Location/Qualifiers
     source          1..1988
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 64.34 cM"
     gene            1..1988
                     /gene="4921528I07Rik"
                     /note="RIKEN cDNA 4921528I07 gene"
                     /db_xref="GeneID:77049"
                     /db_xref="MGI:MGI:1924299"
     exon            1..98
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..1696
                     /gene="4921528I07Rik"
                     /codon_start=1
                     /product="uncharacterized protein LOC77049"
                     /protein_id="NP_001371174.1"
                     /db_xref="GeneID:77049"
                     /db_xref="MGI:MGI:1924299"
                     /translation="MGNCCDTRVLPQECTNTPFSTDDRPRTKSSLTVGSRKRRNIFRI
                     IRNIHHKNPVVPMEAEEHQAPTSSSIQKPQNETKAKHGDGTTSEEDEEKSPLRRVKVA
                     SKRSRHRIPFLRNKCRRGSLLPMDAQECDFIDTSCEGKPQDNLEVVAECSDGAALSVD
                     KGKGPVKMAEATSKKRRCVSAILKKFSRRRVVAPIKLRRPVVLPGTSKETAPVTTEVV
                     PENADSAPSARGQKEPPVEMMKEETKKRRHIFSILRGICHKTTVVPQDTQRLPVSKAT
                     STKATEIKAKDIPENTETMESVEERKQRRITALLKRVEEKQAMAPPEVCGPQVCNIPS
                     PKTNVRHDKAENATAASPLSKDHTSQSVTMVEPKGCKFSSVFRKFYRTDSSPPQAPEK
                     PSALKGASKETQPTIKTGSQCTPEIKEIFCKKEEFEYHDEGSWEEYQSYFPHGIHVPD
                     SRQTIASTLIGSCIAEVGDTDMEKEQNTLDSTENFPEAIEVQQWELRKTSNTVAPAVN
                     VLFLAPPTSSDDEEYYTPIKRKKRRKKRRRYY"
     exon            99..169
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            170..194
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            195..308
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            309..373
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            374..398
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            399..512
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            513..583
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            584..608
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            609..722
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            723..793
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            794..818
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            819..932
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            933..964
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            965..989
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1103
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1165
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1187
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..1301
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1302..1369
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..1394
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1435
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1436..1460
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1461..1532
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1533..1589
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1590..1720
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..1988
                     /gene="4921528I07Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtatacttt gagatttcct cagagtacac gtctataact acagagcgat agtagtgttg
       61 gaatctgagt ataatgggta actgttgtga taccagagtc ctacctcaag aatgtactaa
      121 cacacccttc tcaactgatg accgtcctcg gacaaaatcc tcactgaccg tgggctccag
      181 aaaacgccgg aacatattta gaatcataag aaatatccac cacaagaatc ctgttgttcc
      241 catggaagct gaagaacatc aagccccaac ttcctcatct atacaaaaac cacaaaatga
      301 aacaaaagct aaacatggtg acggtacaac ttcagaagag gacgaggaaa agtcaccact
      361 gcgtagggtt aaggtagctt ctaaaagaag cagacatagg attccgttct tgagaaacaa
      421 gtgtcggagg ggcagtctcc tcccaatgga tgctcaagaa tgtgacttta tagatacaag
      481 ttgtgaagga aaaccacaag acaacctaga agtggtagct gaatgctctg atggtgcagc
      541 tttgtcagtg gacaagggga aaggaccagt gaaaatggca gaggcaacat cgaaaaaacg
      601 aagatgtgtt tctgcaatct taaagaaatt ttctcgaagg cgagtggtgg cccccattaa
      661 actgagaaga cctgtagtcc tccctggcac ctccaaagaa acagcacctg tcacaacaga
      721 agtggtccct gaaaatgctg acagtgcacc ttcagcaagg ggacagaaag agccaccagt
      781 agagatgatg aaggaggaga ctaaaaaacg tagacacatt ttttctatct taagaggaat
      841 ttgtcataag acaactgtag tccctcagga cacgcagaga cttccagtct ctaaggctac
      901 atctacaaaa gcaactgaaa taaaagcaaa agacataccg gagaatactg agactatgga
      961 gtcggtggaa gaaagaaaac agagacgcat tactgcacta ttaaaaagag ttgaagagaa
     1021 gcaagctatg gcccctccag aggtttgtgg accacaagtc tgtaacattc cttcgcctaa
     1081 aacaaatgtc aggcatgata aagcagagaa tgccactgca gcttcaccac tgagcaaaga
     1141 ccatacatca cagtctgtga caatggtgga acccaaagga tgtaaatttt cttcagtctt
     1201 tagaaaattt tataggacgg actcaagtcc cccccaggct ccggagaaac cttcagccct
     1261 taaaggtgca tccaaagaaa cccaaccaac tattaaaaca ggaagtcagt gtacacctga
     1321 aattaaagaa atattttgta aaaaagaaga gtttgaatat catgatgagg ggtcctggga
     1381 agaataccaa agctatttcc cacatggtat ccatgttcca gattcaagac aaaccattgc
     1441 ttccaccctg atagggagtt gtatagccga ggtgggagat acagatatgg aaaaagaaca
     1501 aaatactctg gatagtacag agaattttcc tgaagccata gaagtccagc agtgggaatt
     1561 gagaaaaaca tcgaacactg ttgctcctgc tgtcaatgta ttatttttag caccaccaac
     1621 atcttcggat gacgaagagt attatacacc cataaaaaga aagaagagga ggaaaaagag
     1681 gaggcgctat tactaagcga aagcctccat tattgctcca gcaggctggt tcagaccatt
     1741 caccactggg gcaggaccac ctgctgtgct gcttctcatc tctctccttt gatgtgacac
     1801 tgcctgcccc ctgcctgagg ccacaccagg ttctccaaga ttttctggaa ttatcagcaa
     1861 actgtgaatt taggagtttc tgttaaaagg ccattctgac cacttaacta gaaacttgga
     1921 gtgactgggg gtgggcttcc ctctttataa agcacaggca ttattaaaca tttgagcctt
     1981 gatcagaa
//
