LOCUS       NM_025722               1595 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 4921524J17 gene (4921524J17Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_025722
VERSION     NM_025722.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Lewandowski,J.P., Du,F., Zhang,S., Powell,M.B., Falkenstein,K.N.,
            Ji,H. and Vokes,S.A.
  TITLE     Spatiotemporal regulation of GLI target genes in the mammalian limb
            bud
  JOURNAL   Dev Biol 406 (1), 92-103 (2015)
   PUBMED   26238476
REFERENCE   3  (bases 1 to 1595)
  AUTHORS   Shimogori,T., Lee,D.A., Miranda-Angulo,A., Yang,Y., Wang,H.,
            Jiang,L., Yoshida,A.C., Kataoka,A., Mashiko,H., Avetisyan,M.,
            Qi,L., Qian,J. and Blackshaw,S.
  TITLE     A genomic atlas of mouse hypothalamic development
  JOURNAL   Nat Neurosci 13 (6), 767-775 (2010)
   PUBMED   20436479
REFERENCE   4  (bases 1 to 1595)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1595)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   6  (bases 1 to 1595)
  AUTHORS   VanBuren,V., Piao,Y., Dudekula,D.B., Qian,Y., Carter,M.G.,
            Martin,P.R., Stagg,C.A., Bassey,U.C., Aiba,K., Hamatani,T.,
            Kargul,G.J., Luo,A.G., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Assembly, verification, and initial annotation of the NIA mouse
            7.4K cDNA clone set
  JOURNAL   Genome Res 12 (12), 1999-2003 (2002)
   PUBMED   12466305
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CK333687.1 and AK014959.1.
            
            On Dec 10, 2009 this sequence version replaced NM_025722.2.
            
            Transcript Variant: This variant (1) represents the longer,
            protein-coding transcript.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK014959.1, AK169408.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849381,
                                           SAMN00849384 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                CK333687.1         1-24
            25-1595             AK014959.1         18-1588
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 41.61 cM"
     gene            1..1595
                     /gene="4921524J17Rik"
                     /note="RIKEN cDNA 4921524J17 gene"
                     /db_xref="GeneID:66714"
                     /db_xref="MGI:MGI:1913964"
     exon            1..183
                     /gene="4921524J17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             118..582
                     /gene="4921524J17Rik"
                     /codon_start=1
                     /product="UPF0547 protein C16orf87 homolog"
                     /protein_id="NP_079998.1"
                     /db_xref="CCDS:CCDS22498.1"
                     /db_xref="GeneID:66714"
                     /db_xref="MGI:MGI:1913964"
                     /translation="MSATRAKKVKMATKSCPECDQQIPVACKSCPCGYIFISRKLLNA
                     KHSEKSPPSTENKHEAKRRRTERVRREKINSTVNKDLENRKRSRSNSHSDHIRRGRGR
                     PKSSSAKKHEEEREKQEKEIDIYANLSDEKAFVFSVALAEINRKIINQRLIL"
     exon            184..280
                     /gene="4921524J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            281..463
                     /gene="4921524J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            464..1595
                     /gene="4921524J17Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1474..1479
                     /regulatory_class="polyA_signal_sequence"
                     /gene="4921524J17Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1500
                     /gene="4921524J17Rik"
                     /note="major polyA site"
     regulatory      1570..1575
                     /regulatory_class="polyA_signal_sequence"
                     /gene="4921524J17Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1590
                     /gene="4921524J17Rik"
ORIGIN      
        1 cgcagccccg cgcacgcgca cgcgcgcctc cacggctggg tcgcggctgg agtgaggacg
       61 cgctgtgtgg agcagcggag gcacggcgct gcttccaccg ctgctcagga ggggagcatg
      121 tctgcaactc gagccaagaa agtgaagatg gccaccaaat cgtgccccga gtgcgaccaa
      181 cagattcctg ttgcgtgtaa atcatgtccc tgtggttaca tatttattag cagaaaacta
      241 ctaaatgcaa aacattcaga gaaatcaccg ccgtctacag aaaacaagca cgaggccaag
      301 aggaggcgaa cagagagagt taggcgagag aagataaatt ctacagtaaa taaagattta
      361 gaaaacagaa agagatctcg aagtaacagc cattcagatc atatcagacg agggagagga
      421 cgacctaaaa gttcatccgc caaaaaacac gaggaagaga gagaaaaaca ggaaaaggaa
      481 atcgacatct atgctaacct ctctgatgag aaggctttcg tgttttcagt tgccttggca
      541 gaaataaata gaaaaattat caatcaaaga cttattctct gatatttgtc ttcaaactct
      601 gttggttgcc actttcttca ggattgcatc agcagatcct caggcagtcg tggactctga
      661 ggagcaccag actgtgtgaa tgagggcctt tggttgcttt ctctgtttcc tagtctgctg
      721 ccacgctttg ggagcaaagc tgtgcgttag actttgctgg gatttccttg tttaccaagg
      781 atcattatca gtgttttgtg ttgggatatt actaaatgta tttacaaaga caaacaaaca
      841 aaatgaccag aaaagccccg gaacctggat gggtctttcc cgattggagg gacaggagta
      901 cgggtggaac acacagctgg agcagctgac gtgcttgcta gttttcaggt tcgcaccaga
      961 gatgcagtgt cttaagtcct gtcaggagag tgacttttaa atgtatgtat ttcaggcttt
     1021 caccattaac agattgcata tatacaatcc attgactttt aataaattgg taattgatat
     1081 tttattgaat ggagaattac gaatatagat tataaattct gtctttaatt gacctttttc
     1141 ttgggcgcta ttttaatgat ttaagtagga gttatatttt cagaaacttt ctagacagtt
     1201 tggaaatttg ggtgctatat gaagaaaagc atttgaggct gtatcatatt tcagatataa
     1261 acaccttgtt ttcttgaatg ttttatttat tggtttttaa aaaaaacttt tctgttatca
     1321 agatggtgcc tgttaaccta aacacagata tatttattat ataaattgca aaatatttct
     1381 tagctacttg tgaacagtga tttttttttg tctgaatgtt catttataca taattctggt
     1441 aattatttaa attgttactt catcctggaa aaaaataaac cttaatattg aaagcgagta
     1501 gattaagtag tgtggtgtag ctttttgtcc tagtgaagtt tgtaaagtgt ttcagccagt
     1561 ttttgcagta ttaaatcatc attccttata ctcgc
//
