LOCUS       NM_001113550            2574 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RIKEN cDNA 4833420G17 gene (4833420G17Rik), transcript
            variant 2, mRNA.
ACCESSION   NM_001113550
VERSION     NM_001113550.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2574)
  AUTHORS   Cajigas,I., Chakraborty,A., Swyter,K.R., Luo,H., Bastidas,M.,
            Nigro,M., Morris,E.R., Chen,S., VanGompel,M.J.W., Leib,D.,
            Kohtz,S.J., Martina,M., Koh,S., Ay,F. and Kohtz,J.D.
  TITLE     The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially
            Organizes Megabase Distant Genes in the Developing Forebrain
  JOURNAL   Mol Cell 71 (6), 956-972 (2018)
   PUBMED   30146317
REFERENCE   3  (bases 1 to 2574)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2574)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK008565.1 and AK146515.1.
            
            Transcript Variant: This variant (2) has an alternate internal 5'
            UTR segment, as compared to variant 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK146515.1, SRR1660815.260573.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-9                 AK008565.1         2-10
            10-2574             AK146515.1         1-2565
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 67.24 cM"
     gene            1..2574
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /note="RIKEN cDNA 4833420G17 gene"
                     /db_xref="GeneID:67392"
                     /db_xref="MGI:MGI:1914642"
     exon            1..361
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            362..655
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             455..2374
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /codon_start=1
                     /product="uncharacterized protein C5orf34 homolog"
                     /protein_id="NP_001107022.1"
                     /db_xref="CCDS:CCDS49373.1"
                     /db_xref="GeneID:67392"
                     /db_xref="MGI:MGI:1914642"
                     /translation="MGMAAEVRMVLYEDDSVQVHYACGSTLQLSPCGSEFLFEKALPP
                     STHPLEQPERIRQRTHFVISNYREQLQRALDFRNSSATCPFLSESIIPPERKKHIFID
                     FSEVEWPSLDRDDCIMYSESGVVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQRPDSS
                     GILSETQNQDPKNKLVEKTRKVCRCGNLSEQTLRNKENEPPYQILKSKNASVNTCCVN
                     DSEGRGELPSLGTNHRCVYAWVKQAWSVAACPEAWKHPLSLALRFYNKVRAASEIDAD
                     FPASSIVTSDCPEERGTEVSVLPRALLLSCPAPHMHRWTFCDSLLQRQPDAEDFSYPE
                     LVKVVWYKGVTYRLTHKNVNSIEIFPGDGSVFKSEGAHFGNYFTYYPSQEESEKREEK
                     TYSVNNLPPDRPGNFFSVRSLIKQATRILQHCAKIRLSLSHNYRVCCWKMAPGVSVST
                     ILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTVTLNWHLSSSAEKKQVDQGLSFGW
                     CRLTFPDGQDQLIPTEHPGAYERYVTSVISWCRGLTQTSPRQVPTHLSPALKENWSVA
                     SELEKIQKFNWLLENSGVLNLTSSKNEQCSGHCKSGSSETLLEATNEERVSVALKRTS
                     EILQDIDRLLSLSRK"
     exon            656..745
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            746..1392
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1393..1494
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1495..1618
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1619..1710
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1711..1780
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1781..1951
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1952..2046
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2047..2142
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2143..2183
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2184..2574
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2566
                     /gene="4833420G17Rik"
                     /gene_synonym="2210017J06Rik; 5730533D17Rik"
ORIGIN      
        1 gcttttccgg agaccgcccc ttcctctcgg tgcgggaggc tccaactgct gcctcgcttt
       61 gtgttttgtt tgtttgtgtt ttgtttgttt gtgttttgtt cctcgcgtcg ccgatgctgc
      121 cccagaggac tggaccggtg tttcaaccga aacacttctt gtatccgtgt ttttccgtag
      181 atgtgattat ttttcttcct caagaaatgc ttctcggtag ttaatacatt acggaaggaa
      241 ccgtggagaa gcgctacgca aacagcacag ttcgtgccac ttgagcaaaa tagaggtcgg
      301 tcggaggccg aggttgccct cccttccagg tgcagaacaa cttcgcagcc cacagccgcc
      361 gcttgacaga actcctgagc cttaagcaca ctgcctgtgc tgctgtgtcc ccattccccc
      421 acagtccatg ctgagaaggg cggcgtagcc aggcatggga atggcagctg aggtgcgaat
      481 ggtgctctat gaggatgatt ccgtccaagt gcactacgct tgtgggtcca cgctgcagct
      541 ctctccttgc ggctctgaat ttctctttga aaaggcactt cctccctcaa cacatccttt
      601 agaacaacca gagagaatcc gtcaacggac acactttgtt attagcaact accgagagca
      661 acttcagcgg gccctagatt ttcgaaactc ttcagctaca tgcccttttt tatctgaaag
      721 catcatacct cctgaaagaa aaaagcatat cttcattgat ttctcggaag tagaatggcc
      781 cagccttgac agagatgact gcatcatgta ctcggagagt ggcgtggtga agataacatc
      841 cctggatgga cacgcgtacc tttgtctgcc cagatctcag catgaattta cagtacattt
      901 tttgtgtaaa gtgagccaga ggccagattc atctggcata ctatccgaaa cacagaatca
      961 ggaccccaaa aataaactag ttgagaagac cagaaaagtc tgcagatgtg gaaatttatc
     1021 agaacaaacg ttaaggaata aagaaaacga acctccttac cagatcttga aatctaaaaa
     1081 cgcttcagtg aacacatgtt gtgtgaatga cagtgagggg agaggggagc ttccttccct
     1141 gggcacaaat cacagatgtg tgtacgcatg ggtaaagcag gcttggtctg ttgccgcctg
     1201 tccagaggcg tggaaacacc ctctgtcttt agcacttcgt ttttataaca aagttcgtgc
     1261 tgcatctgaa attgatgcag atttccctgc gagtagcatt gtgacttctg actgtcctga
     1321 agaaagagga acggaggttt ctgtccttcc cagggccttg ttactcagct gccctgcccc
     1381 acacatgcac aggtggacct tctgtgactc acttctacag agacagcccg atgcagaaga
     1441 cttttcctat cctgagcttg tgaaggtggt gtggtataag ggtgttacat acaggcttac
     1501 ccataaaaat gtaaactcaa tagagatttt tcctggagac ggatcggttt tcaagtcaga
     1561 aggggctcat tttggtaact attttacata ttatccaagt caagaagaat cagaaaagag
     1621 agaagagaaa acttactctg taaataacct tcctccagac agaccaggaa atttcttctc
     1681 tgtgcgttct ctgattaaac aggcaaccag aattcttcaa cattgtgcca agataaggct
     1741 ttccctaagc cacaactaca gagtgtgctg ctggaaaatg gcacctggag taagtgttag
     1801 cactatcctg cccgtgcttc tgaaggaatc cctcatccca ggcgtgggga gattccttgc
     1861 ctactccgat gacaaagtcc atgctgtctt tttggatggc gtcacagtaa cactgaattg
     1921 gcatctcagc tcctctgctg agaagaaaca agtagatcaa gggctcagct tcggttggtg
     1981 cagattaact tttcctgatg gacaggatca gttaattcca actgaacacc ctggagcgta
     2041 tgaaagatat gtgacatcag taatatcatg gtgcagagga ctaacacaga ctagcccaag
     2101 acaggtgccc acacatctct cacctgctct caaagaaaac tggtctgttg cttctgagct
     2161 tgagaaaata cagaaattta actggctgtt ggaaaacagt ggtgtcctca acctaacttc
     2221 tagcaagaat gagcagtgtt ctggtcactg taaatcagga tcttcagaaa ccttgctgga
     2281 agcaaccaat gaagagaggg tatcggtagc attgaaaaga acttctgaaa tcctccagga
     2341 tattgaccgt cttctgtcac tctctagaaa gtgaaaaatg aaagtattat aaaacctgaa
     2401 ggacgtttca agttactagt gtggaattgc tacagaccca agacattgca gatgttactt
     2461 ctgcggaatg attgtgcaga actgacttca ctttgattgt gttttgctca tcttgtaaac
     2521 tttagtgttt gtgtgtgtat acatttttta aataaagaac agttttgaaa tttt
//
