LOCUS       NM_027510               1020 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus RIKEN cDNA 3830403N18 gene (3830403N18Rik), mRNA.
ACCESSION   NM_027510 XM_001006192
VERSION     NM_027510.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Nagamachi A, Matsui H, Asou H, Ozaki Y, Aki D, Kanai A, Takubo K,
            Suda T, Nakamura T, Wolff L, Honda H and Inaba T.
  TITLE     Haploinsufficiency of SAMD9L, an endosome fusion facilitator,
            causes myeloid malignancies in mice mimicking human diseases with
            monosomy 7
  JOURNAL   Cancer Cell 24 (3), 305-317 (2013)
   PUBMED   24029230
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK014416.1.
            
            On Apr 5, 2007 this sequence version replaced NM_027510.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK014416.1, SRR7652917.16414.1
                                           [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN01164133,
                                           SAMN01164134 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1020              AK014416.1         2-1021
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 30.06 cM"
     gene            1..1020
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /note="RIKEN cDNA 3830403N18 gene"
                     /db_xref="GeneID:70691"
                     /db_xref="MGI:MGI:1917941"
     exon            1..54
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /inference="alignment:Splign:2.1.0"
     exon            55..180
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /inference="alignment:Splign:2.1.0"
     CDS             111..737
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /codon_start=1
                     /product="Xlr-like"
                     /protein_id="NP_081786.1"
                     /db_xref="CCDS:CCDS30141.1"
                     /db_xref="GeneID:70691"
                     /db_xref="MGI:MGI:1917941"
                     /translation="MENWDLSSDEKQDWNAPELDLIEEQNPVTHDDENANPEEVVGDT
                     RSPVQNILGKFEGDINKTLHIKRKRMETYIKDSFKDSNQKLEQLWKTNKQERKKINNK
                     FCEQYITTFQKFDMDVQKFNEEQEKSVNNYQKEEQALKLSKCSQSQTLEAIKDMHEKY
                     MEGLMNLETNNYNVLFDVDGELRKEMSVFKKDLMKHTLKYSSTFPSSD"
     exon            181..244
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /inference="alignment:Splign:2.1.0"
     exon            245..279
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /inference="alignment:Splign:2.1.0"
     exon            280..397
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /inference="alignment:Splign:2.1.0"
     exon            398..497
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /inference="alignment:Splign:2.1.0"
     exon            498..596
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /inference="alignment:Splign:2.1.0"
     exon            597..1020
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1003..1008
                     /regulatory_class="polyA_signal_sequence"
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /note="putative"
     polyA_site      1020
                     /gene="3830403N18Rik"
                     /gene_synonym="Xlrl"
                     /note="putative"
ORIGIN      
        1 gaagccgagt ttttgaggaa gcgaagttct tgaggaagcc gagaagttct tgagaaaaca
       61 taagtttttt agtggaaagg cagcgttttg aatattctct agagacacca atggaaaact
      121 gggatttgtc aagtgatgaa aagcaagatt ggaatgctcc agaattggac cttattgaag
      181 aacagaatcc agtaactcat gatgatgaga atgcaaatcc tgaagaagta gttggagata
      241 cacgatctcc agtacaaaat attctgggaa aatttgaagg tgacattaac aagacgcttc
      301 acataaaaag aaaacgcatg gaaacttata tcaaagattc tttcaaagac agcaaccaga
      361 aattagaaca actttggaaa acgaacaaac aggagagaaa gaagattaac aacaaatttt
      421 gtgagcagta tataactaca tttcagaagt ttgatatgga tgtccagaaa ttcaatgaag
      481 aacaagaaaa atcagtgaac aattatcaaa aggaagaaca agcattaaaa ctgtccaaat
      541 gtagtcagag ccagactctg gaagcaatta aagacatgca tgagaagtac atggagggtc
      601 tgatgaactt ggagaccaac aactacaatg tgctttttga tgtagatggt gaactgagaa
      661 aagaaatgtc agtgtttaaa aaagacctca tgaagcatac tctgaagtac tcttctactt
      721 tcccatcttc agactaagga agcatgcata ttttgcactt gctggtacat ttgcaaccaa
      781 ataaaaaatt cgctaacttt tttgtctctt atgaaacaga gtttgaaagg ctctttaatc
      841 cttgttattc tgaagattct aagaaggaag ttaaccccca gtgaagggat tacaaagtta
      901 actaggaggt atacctttag agtcaaaatc gaactccttt atttttaaac acctaaataa
      961 ttttcttgtt taaatgtaag agcctcttta tattaacttc caaataaaat gtaaatgaat
//
