LOCUS       NM_001370770             967 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 3110040N11 gene (3110040N11Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_001370770 XM_006541114
VERSION     NM_001370770.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 967)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC102077.7.
            
            On Mar 29, 2022 this sequence version replaced NM_001370770.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422597.354445.1,
                                           SRR13422592.95842.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-204               AC102077.7         166650-166853
            205-331             AC102077.7         167529-167655
            332-459             AC102077.7         169901-170028
            460-567             AC102077.7         172967-173074
            568-967             AC102077.7         173524-173923
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 45.71 cM"
     gene            1..967
                     /gene="3110040N11Rik"
                     /note="RIKEN cDNA 3110040N11 gene"
                     /db_xref="GeneID:67290"
                     /db_xref="MGI:MGI:1914540"
     exon            1..204
                     /gene="3110040N11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..555
                     /gene="3110040N11Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UPF0235 protein C15orf40 homolog"
                     /codon_start=1
                     /product="UPF0235 protein C15orf40 homolog isoform 1"
                     /protein_id="NP_001357699.1"
                     /db_xref="GeneID:67290"
                     /db_xref="MGI:MGI:1914540"
                     /translation="MLLLAVGRCAWPLLDSCVVPQCLRKPVRQARPVASLVLWRGWAT
                     GLHWRGTDAAPGGRKTSLRVQGKNQTKEPETAPPAAGPVATDPKGFVTIAIHAKPGSR
                     QNAVTDLSTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDVVLDKGGKSREKVVK
                     LLASTTPEEVLEKLKTEAEKK"
     exon            205..331
                     /gene="3110040N11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            332..459
                     /gene="3110040N11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            460..567
                     /gene="3110040N11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            568..967
                     /gene="3110040N11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      844..849
                     /regulatory_class="polyA_signal_sequence"
                     /gene="3110040N11Rik"
                     /note="hexamer: AGTAAA"
     regulatory      848..853
                     /regulatory_class="polyA_signal_sequence"
                     /gene="3110040N11Rik"
                     /note="hexamer: AATAAT"
     polyA_site      865
                     /gene="3110040N11Rik"
                     /note="major polyA site"
     polyA_site      868
                     /gene="3110040N11Rik"
     regulatory      946..951
                     /regulatory_class="polyA_signal_sequence"
                     /gene="3110040N11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      967
                     /gene="3110040N11Rik"
ORIGIN      
        1 gtggttggga tgctgctgct tgctgtaggt cggtgtgctt ggcctctgtt agactcctgt
       61 gtggttccac aatgcctaag aaagccggtg cgacaagcaa ggccagtggc aagcctcgtg
      121 ttgtggagag ggtgggccac ggggctacac tggcggggaa cagacgcagc gcctggaggg
      181 cggaagacct cccttcgggt ccagggtaaa aaccaaacca aagaaccaga gacagcacct
      241 cctgctgcag ggcctgtagc aactgaccct aaaggttttg tcaccatagc cattcatgcc
      301 aaacctggct ccagacagaa cgctgtgaca gatctgagca ctgaggccgt tggtgtggcc
      361 attgcagcac ctccgtccga gggagaggca aatgcggagc tgtgtcggta cctctccaag
      421 gtcttggacc tcaggaagag tgacgtggtt ctggataagg gtggtaaatc tcgggaaaag
      481 gtggtgaagc tcttggcctc tacaactcca gaggaggtct tggagaagct gaaaacagaa
      541 gctgagaaga aataaaggcg agaaatggaa acagctgctg tctgcgacgg agcatctgag
      601 ctgcaggcac tgggagagga gctgaaggtc gccgcgtgga ggcggacagg acaccagctc
      661 cctggactcc gagtgaagct ttagctttat agctccacaa tgttttgtgg agttctgggg
      721 tctcctaatt cagtttacaa ctggaaaacc ttttgtgctg cttctattct aagtttttgg
      781 tttttaaatg caaaagtgtt ctctttatat cttttaaaga ttctctggaa catttcgtgg
      841 aaaagtaaat aatcatgcag acgtataact taatgtcagt tatttttgga accttgtaaa
      901 ctttcaaatc tagaagttct taggcatctc caaagctctt aaaagaataa agatgtatca
      961 ggagcaa
//
