LOCUS       NM_028439                520 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 3110009E18 gene (3110009E18Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_028439 XM_129396
VERSION     NM_028439.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK014026.1 and BC028767.1.
            
            On Feb 2, 2010 this sequence version replaced NM_028439.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            CDS exon combination :: BC028767.1, AA867629.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN00849375, SAMN00849380 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-8                 AK014026.1         2-9
            9-520               BC028767.1         1-512
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 52.66 cM"
     gene            1..520
                     /gene="3110009E18Rik"
                     /note="RIKEN cDNA 3110009E18 gene"
                     /db_xref="GeneID:73103"
                     /db_xref="MGI:MGI:1920353"
     exon            1..31
                     /gene="3110009E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            32..176
                     /gene="3110009E18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..424
                     /gene="3110009E18Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UPF0538 protein C2orf76 homolog"
                     /codon_start=1
                     /product="UPF0538 protein C2orf76 homolog isoform 1"
                     /protein_id="NP_082715.1"
                     /db_xref="CCDS:CCDS15232.1"
                     /db_xref="GeneID:73103"
                     /db_xref="MGI:MGI:1920353"
                     /translation="MAAEEATLTVRLIRSFEHRNFKPVVYHGVNLHQTVKEFIIFLKQ
                     DVPLRTSLPPPLRNYKYDTLKILHQAHKAKTNELVLGLEDDDTLLLKEDRTLKDSGVA
                     SETEIAFFCGEDYKRYKANPISSW"
     exon            177..227
                     /gene="3110009E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            228..265
                     /gene="3110009E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            266..347
                     /gene="3110009E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            348..496
                     /gene="3110009E18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      476..481
                     /regulatory_class="polyA_signal_sequence"
                     /gene="3110009E18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      494
                     /gene="3110009E18Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggggaggagc cgcggggcac gttgggagca ggtatctctc cacatggctg cggaggaagc
       61 caccctcaca gttcgcctca tccgttcatt tgagcatcgg aatttcaaac ctgtagtgta
      121 tcatggagta aacttgcatc aaactgtaaa ggaatttata atatttctaa agcaagatgt
      181 ccctttgagg accagcctgc caccgcccct cagaaattac aaatacgata cactaaagat
      241 tcttcatcaa gctcacaaag caaagacaaa tgagcttgtg ttgggtttgg aggacgacga
      301 cacactcctg ctaaaggaag acagaacact gaaggactca ggagtagcca gtgaaactga
      361 aattgcattc ttctgtggag aagattataa gcgatacaaa gctaatccca tctcgtcctg
      421 gtgaaagcgg ctgcggacct ttgttccaca agttttgttt ttttataaat tgtcaaataa
      481 atctttttta aaaagcaaaa aaaaaaaaaa aaaaaaaaaa
//
