LOCUS       NM_001144993            3345 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 2810459M11 gene (2810459M11Rik), transcript
            variant 2, mRNA.
ACCESSION   NM_001144993
VERSION     NM_001144993.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3345)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3345)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC137675.1, AC102506.9 and BI134895.1.
            
            [WARNING] On Aug 15, 2024 this sequence was replaced by
            NM_001144993.2.
            
            Transcript Variant: This variant (2) uses an alternate in-frame
            splice site in the central coding region, compared to variant 1.
            The resulting isoform (2) is one amino acid shorter than isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The extent of this transcript is
            supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC137675.1, SRR11927933.40594.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-58                BC137675.1         1-58
            59-59               AC102506.9         125080-125080
            60-1225             BC137675.1         60-1225
            1226-3092           AC102506.9         132513-134379
            3093-3345           BI134895.1         1-253               c
FEATURES             Location/Qualifiers
     source          1..3345
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 43.94 cM"
     gene            1..3345
                     /gene="2810459M11Rik"
                     /note="RIKEN cDNA 2810459M11 gene"
                     /db_xref="GeneID:72792"
                     /db_xref="MGI:MGI:1920042"
     exon            1..710
                     /gene="2810459M11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             101..961
                     /gene="2810459M11Rik"
                     /note="isoform 2 is encoded by transcript variant 2;
                     uncharacterized protein C2orf72 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C2orf72 homolog isoform
                     2"
                     /protein_id="NP_001138465.1"
                     /db_xref="CCDS:CCDS78641.1"
                     /db_xref="GeneID:72792"
                     /db_xref="MGI:MGI:1920042"
                     /translation="MESELEALAPRPASPAEPPFQALVEAAGGRGQVLLVGELWEREQ
                     SRALLRDFAGAVFPPESAPGKPGCAEAESAGTAAATESHGAPGAKAERAIRSPLVFVL
                     CRVGSLTSRESRRRLREMLRDVRDRRCEGAALVGVLVADTGADDARAPELQLLETLLR
                     TVFGRQVGGPVQAAAFRPGCPASSLAVQEAACRALQAAGPGRPEGAWERPARTGLLTC
                     FSWGPRRQRKNRGVTSSQGPAQEHLQFSEEELALTPVFPNGDCEDRGNGSRAQDGGVH
                     IPPDPPEDTR"
     exon            711..821
                     /gene="2810459M11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            822..3328
                     /gene="2810459M11Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2919
                     /gene="2810459M11Rik"
                     /note="major polyA site"
ORIGIN      
        1 gacaggagtg cgcagggggt ctgggcggct cggccctcgg gggcgtgtcg gccgaggcag
       61 cggcggagct cccagctcgg cgcaggaggc ggcggccagc atggagagcg agctggaggc
      121 gctggccccg cggcccgcga gcccggcgga gccacccttc caggcgttgg tggaggcggc
      181 gggtggccgc gggcaggtgc tgctggtggg cgagctgtgg gagcgcgagc agagccgcgc
      241 gctgctgagg gacttcgccg gtgccgtgtt cccgccggag tccgcgccgg gcaagccggg
      301 ctgcgcagag gccgagagcg cgggcaccgc ggcggccacc gagtcgcacg gggctccggg
      361 ggcgaaggcg gagcgagcca ttcgctcgcc gctcgttttc gtgctgtgcc gcgtcggatc
      421 gctgacctcc cgggagtcgc ggcgccgcct gcgggagatg ctgcgggacg tgcgcgaccg
      481 gaggtgtgag ggcgccgcgc tggtcggagt gctggtggcc gacacgggtg cggatgacgc
      541 gagggcgccc gaactgcagc tgctcgagac gctgctgcgc acggtgttcg gccgccaggt
      601 cgggggcccg gtgcaagcag cagcctttcg tcccggctgt cccgcctcca gcctggcggt
      661 ccaggaggcg gcctgcagag ccctgcaagc tgcggggccg ggacgaccag aaggtgcctg
      721 ggaaagacct gcccgcactg gcctactgac ttgcttctcc tggggtcctc ggaggcagag
      781 gaagaaccga ggtgtcacct cctctcaagg cccagctcaa gaacacctcc agttctcgga
      841 agaggagctt gcactgacac ctgtatttcc caatggagac tgtgaagacc gtggaaatgg
      901 atctagagcc caggatggtg gtgtccacat cccacctgac cccccagagg acacaagatg
      961 aaggctgggc ccctggactg gccctaacct gcacactgga ctctggccct tctcagtgag
     1021 tctccacgtc acagtgttac ctcagcagat ggtgactgac tgactctcaa gacccccctt
     1081 gcttgggggc tgccgcttca ctgttgccag ctcggcaaca aggcctatgg gacctgctcc
     1141 acactcagtg ttcctttact ctgtggtcat ggtggctcga tcttgtctct ctgtgccttc
     1201 acttctctga gccaaggagc cactgtaacg gctttgcaga catgtcactc agtctctggg
     1261 cttgtttccc aaataaccga agggctgcca acccagtggc tttccgccag gagccacgct
     1321 gcacctccgg gcaacactgg aaacttgtgt gaaagcaatt agtggtcatc tcacaagtgt
     1381 ggagggtgga ccagctacaa ataattagtt tactcagaat gctgattgtg acagttttga
     1441 aaaatagaag ggccgatccc ttctccctgt cattctggga agatatcccc ttaggtttcc
     1501 tgggatcttg gctcccagaa caagccaaaa taaagacctg actgttgcgg tgagggggcc
     1561 tgtcaggcca gagccaagat ggcttgtgtg ttccagggcc aggaccaaaa gcgccttgca
     1621 tgctctgaga aaaaggggcc tctgtctctt ctcatgttga cactgattgc tgtgccaaac
     1681 cctctgtgga agtttgctgg gagctgccta tagcaccaag gagagggaaa gccagggtat
     1741 tgggattctt agcccccgga cttgtgctag atctcaggtc ctgacccaag tatcctggag
     1801 gttctggaat cttccctctg agtctgtgag tcacataggg tgagtaaata tctcccacag
     1861 agcctaccag ggtatctatt catgcagaag caactgggga ccacctctgt tgcccctgcc
     1921 tgcccctgga gaaatccatc tctggaagga caaaagccct tactggtttt tccctgatat
     1981 ggagaaagca ctgtcagagg ggagtagaca catctgtgag acgctctgca gatacccagg
     2041 tgtgctgtgc ttcgcatagc tccctgtgag gaggagctgc atacctctga gtcacgattc
     2101 agctctttct gtgatgattc ggagggagag gaccctccct gctcctgcct cagtttcttc
     2161 ttggtgatcc acagcctaac cctattccct ctcagtctca agtagaaact gtgaagtcga
     2221 aagagacagt gtcttcctgg aatgaggtgg gagcagacat cattttaata atgcaaggtt
     2281 gtaccccgta ggaaatggcc ccaactagca tcctttattc aagaatgaac tccaggccag
     2341 gatgtagctc agttagtaga aggctagcct agaatgctag tttgatcccc atcatgtata
     2401 aactggatga agtgcatatg cctataaccc cagttctttg gaagtagaga tagaaggatc
     2461 agaagttcaa atccaccctc agctacaatg tgaaatggag gctagcctgg gctacatgag
     2521 actctgtctc aaaaaaaaaa aaaactttga attattaatt tgacttgact ttgtttttaa
     2581 acgggaagag tggtatattt caagctgcta tatttttgtt acagtattga tctatgcaat
     2641 cctgtgtaat cattcagtta agatttttat tatttgatca aagaaagggg ctagaaattt
     2701 aggttgggaa tttgtctaag atagacgtta caagggttaa aaatcttttg tatctgttac
     2761 ccttgttgaa acttaggaaa ctgaacattt aaatcgttgt ttcctgcagt ctgtggcgat
     2821 tcctctccag ccctcacttg gagctccatc ccctctgtac tttcctcaca gggacatttg
     2881 agtttgtagt ctctggtcta aagtgtgatt tacagaccat tcacattggt ggttgtggtt
     2941 ttaattgcca actgcagatc tcgggactgg ttgaaaaggt ctttgtactg agtctggctt
     3001 ctgcttccca gctggtaaaa caggtgcagc agtggcccgt ggttcccagc agacagaaag
     3061 acctgggttt caccaagggt ggtcttgtgg ggcccttcca ggggacttta gaaagacatg
     3121 gaggttggag tggcctgagg aaaggctgga gacctggagg tccagtggtc cctgggagcc
     3181 cagtgtgagg aactgcccag gcaggcccca ctctgggtcc tggggttcta acctgtaatg
     3241 tgatggaggt tccccctgct tttgacctga atgctggttc cttacctcta ataaaccaga
     3301 cagtgcctcg ctgtatctga tagaagcaaa aaaaaaaaaa aaaaa
//
