LOCUS       XM_055019644            1682 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus RIKEN cDNA 2810039B14 gene (2810039B14Rik),
            mRNA.
ACCESSION   XM_055019644
VERSION     XM_055019644.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000081.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 20% of CDS bases
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-31                AC119264.8         14136-14166         c
            32-231              AC119264.8         13038-13237         c
            232-429             AC119264.8         9363-9560           c
            430-720             AC119264.8         9071-9361           c
            721-722             "NN"               1-2
            723-1134            AC119264.8         8659-9070           c
            1135-1135           "N"                1-1
            1136-1682           AC119264.8         8112-8658           c
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="15"
     gene            1..1682
                     /gene="2810039B14Rik"
                     /note="RIKEN cDNA 2810039B14 gene; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 3 bases in 2 codons; deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 ESTs, 1 long SRA read, 2 Proteins, and
                     85% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:72665"
                     /db_xref="MGI:MGI:1919915"
     CDS             1..1212
                     /gene="2810039B14Rik"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons;
                     deleted 1 base in 1 codon; substituted 1 base at 1 genomic
                     stop codon"
                     /codon_start=1
                     /transl_except=(pos:613..615,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: zinc finger protein GLI4"
                     /protein_id="XP_054875619.1"
                     /db_xref="GeneID:72665"
                     /db_xref="MGI:MGI:1919915"
                     /translation="MPGGSVLASEDRPDRTVLGRWTDTLCGEATRLNSFERQEATEVW
                     SSGVQRLPELGAGPPRDRALPAGANGRPPPIRKCPIQAFPGLSSQSATVGVRLGTTQS
                     FQTEWECEKTPASLSSCSRGDGLASDGRALRGLLKSLPGMSKCGDSVGQECTLEQPVG
                     LPPGAMPCSQKRDTWHMAFLPQGAPGTEGSAKKTAEVGSSLGRDXQQRDPQGIKAYRC
                     EACDKSFKYNSLLLQRQRIHTGXKPYACRECRKGFGSWWGFVLNLRIHTGEKPYEWGQ
                     CGQAFSQSSHFTEHLRIHNGEKPFKCGECGHAFSQSSNLVRHQRLHTREKPYVCSQCG
                     KAFIWGSVLIEHQLIHTGEKPYRCEDCGKAFRGQSHLRTHAGEKXCDTCGKASGQSYQ
                     LTQHQRVHYHE"
ORIGIN      
        1 atgcctggag gttctgtctt agcatctgag gatcgtccag accggactgt gttgggccgt
       61 tggacagaca ccctctgcgg ggaagctaca cggctcaata gctttgagcg tcaagaggcc
      121 accgaggtgt ggtcctccgg ggtccagaga ctcccggaat tgggggcggg gcctcccaga
      181 gaccgagcac ttccggccgg cgcgaacggg cggcctcctc ccattcgcaa gtgccccatt
      241 caggctttcc ctgggctcag ctcccagagt gccacagtag gggtgagact gggaactact
      301 cagtcttttc agactgagtg ggagtgtgag aaaactccag cctctctcag ctcctgcagt
      361 cgtggagatg ggctggcctc agatggaagg gcactgaggg gcctcctgaa gagccttccc
      421 ggcatgtcta agtgtggaga cagcgttggc caggaatgta ccttggagca gccagtaggc
      481 ttgcctccag gagccatgcc ctgctctcag aaaagagaca cttggcacat ggcattcttg
      541 ccccagggag ccccagggac agagggtagc gccaagaaga ctgctgaagt aggcagtagt
      601 ttgggtagag actgacagca gagggaccca cagggcatca aggcataccg ctgtgaggcc
      661 tgtgataaga gcttcaagta caactctctt ctactacagc gccagcgcat ccacacggga
      721 nngaagccct acgcctgccg cgagtgccgc aagggcttcg ggagctggtg gggcttcgtg
      781 ctgaacctcc gcatccacac aggcgagaag ccttatgagt ggggccagtg cggccaggcc
      841 ttcagccaga gctcacactt cacagagcac ttgcgcatac acaatggtga gaagcccttc
      901 aagtgtggcg aatgtggtca cgccttcagc cagagctcca acctggtgcg ccaccagcgg
      961 ctgcacacta gggaaaagcc gtatgtctgc agccagtgtg gcaaggcctt catctggggc
     1021 tcggtgctca tcgaacacca gctcattcac actggcgaga agccctacag gtgtgaagac
     1081 tgcggcaagg ccttccgagg acagtcgcac ttacggaccc acgcgggtga gaagncctgc
     1141 gacacctgtg gcaaagcttc tggccagagc tatcagctca cccagcacca gagggtgcac
     1201 taccacgagt agcgctcacc tcgataaact ttgggtaaac ctgctcctac cgagtgagat
     1261 gggtatgctt tctagggaca cggcagggca tgtcctgtgt ccaggtgtaa tggccaaaga
     1321 aattccattt cctggtaggt attcattcag cttggaaccc actagccact tctctctgac
     1381 tcccgctcct ggaagagccc agtgactctg actcagtcac tcccactcag aagtgtacag
     1441 ccaggaccat ctacttgtta tgacttcttt ggcttctgta acttgcttat gcagatattc
     1501 aaggcctatt ttgaggccgc ccctgactac ctaaccttgg cagagcagca cagctcctgg
     1561 cttgcttgtg cagacaccca gtgtaggttt tcccattaca aatcctgccc tcaccccttt
     1621 gcacagcagt cttagagact ggtgtccttc tagtggtttc aataaattta actaactata
     1681 at
//
