LOCUS       NM_028314               1105 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RIKEN cDNA 2700097O09 gene (2700097O09Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_028314
VERSION     NM_028314.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1105)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1105)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
REFERENCE   3  (bases 1 to 1105)
  AUTHORS   West,D.B., Engelhard,E.K., Adkisson,M., Nava,A.J., Kirov,J.V.,
            Cipollone,A., Willis,B., Rapp,J., de Jong,P.J. and Lloyd,K.C.
  TITLE     Transcriptome Analysis of Targeted Mouse Mutations Reveals the
            Topography of Local Changes in Gene Expression
  JOURNAL   PLoS Genet 12 (2), e1005691 (2016)
   PUBMED   26839965
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1105)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   5  (bases 1 to 1105)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CX231570.1, BC056967.1 and AK012621.1.
            
            On Nov 18, 2009 this sequence version replaced NM_028314.1.
            
            Transcript Variant: This variant (1) represents the protein coding
            transcript.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK012621.1, BC056967.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164143 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-391               CX231570.1         67-457
            392-1090            BC056967.1         386-1084
            1091-1105           AK012621.1         1091-1105
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 23.85 cM"
     gene            1..1105
                     /gene="2700097O09Rik"
                     /note="RIKEN cDNA 2700097O09 gene"
                     /db_xref="GeneID:72658"
                     /db_xref="MGI:MGI:1919908"
     exon            1..130
                     /gene="2700097O09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            131..252
                     /gene="2700097O09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            253..391
                     /gene="2700097O09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            392..513
                     /gene="2700097O09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            514..624
                     /gene="2700097O09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            625..731
                     /gene="2700097O09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            732..822
                     /gene="2700097O09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            823..1105
                     /gene="2700097O09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1061..1066
                     /regulatory_class="polyA_signal_sequence"
                     /gene="2700097O09Rik"
                     /note="hexamer: AATAAA"
     regulatory      1085..1090
                     /regulatory_class="polyA_signal_sequence"
                     /gene="2700097O09Rik"
                     /note="hexamer: AATATA"
     polyA_site      1086
                     /gene="2700097O09Rik"
                     /note="major polyA site"
     polyA_site      1101
                     /gene="2700097O09Rik"
ORIGIN      
        1 gaacctgctc ttggcttgtc cgcgcacttc gccatggact ttcagtccgc tcggagagct
       61 gtacttcagt tgctcggaac tacggctccc gcagatgtcc cggcactgct ccactggatg
      121 aggactaccc gggattttga tgaatttact cacgataata atgacatcat gttgaaaaac
      181 atagctgatg accttcggaa gtgcttgcct gtagaagctg tgctttgctc ggaacatctg
      241 gcccttcaga aaatacgaca acagccagag cccacagtgc atgttgatgc attcctttat
      301 gatgaagact ttattgatac attatgtgag gaaggaaaaa tgagcagaaa ctactgtacg
      361 gtgtgcggct cacaccgaac agcgcctttg ggatttattt ctcactcctt ctccctcacg
      421 gagttgaagt tcatttatca tcatgtactc cctgatctgt caggaaaggt cttggttgac
      481 gttggctcca gacttggcac agtcctttat gggggttacc tttacagctc agcagtgcag
      541 ctctgtgggg tagagctgaa tggacaattt tgccagttgc aggaaatgat cataaagaaa
      601 taccagttcg gtgacagaat aaaggtgctt catgcagaca tctgtaccca gagttccctt
      661 ctgcaaactg ctgatgtcat tgtaatgaat aatgtcttcg aatattttct tactgaggct
      721 caacaggcca gtgcctggaa ctacatcatc cataatgtaa gaaagcaagg atcactatta
      781 gtgacagtac caagtctcca agagtctctc atggggctac agattaatgt gcagctgtcc
      841 tcctgggtgg aagagattcc tctgagcttg gatgtgtact cacaaaggga cattgaccaa
      901 gaagctcttc aacaaatcca tttatataag gttctctagc accaaagcaa cctagtgata
      961 ccttaaccca tatgctttgt atattccctt gcaaacatga ccgtgtgcca gtaactagtt
     1021 ctgtgtgact atgcatatgc agtagtcgta tgtggatata aataaactat gataagataa
     1081 ctaaaatata tatatctgaa atgtt
//
