LOCUS       NM_001004362            4229 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus RIKEN cDNA 2610008E11 gene (2610008E11Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_001004362 XM_483924
VERSION     NM_001004362.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4229)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4229)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK148309.1 and AC104097.5.
            
            On Mar 27, 2010 this sequence version replaced NM_001004362.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082302.1, SRR9219380.90361.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-363               AK148309.1         2-364
            364-456             AC104097.5         138551-138643       c
            457-551             AC104097.5         118898-118992       c
            552-4229            AC104097.5         114638-118315       c
FEATURES             Location/Qualifiers
     source          1..4229
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..4229
                     /gene="2610008E11Rik"
                     /note="RIKEN cDNA 2610008E11 gene"
                     /db_xref="GeneID:72128"
                     /db_xref="MGI:MGI:1919378"
     exon            1..143
                     /gene="2610008E11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..2132
                     /gene="2610008E11Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="uncharacterized protein LOC72128 isoform 1"
                     /protein_id="NP_001004362.2"
                     /db_xref="CCDS:CCDS35965.1"
                     /db_xref="GeneID:72128"
                     /db_xref="MGI:MGI:1919378"
                     /translation="MSAEPVMESVSFEDIAVFFTWEEWQDLDIAQKLLYRDVMLENYS
                     SLVSLGCCVIKPELILMLEREFGPWRVADTSVWNLPGYCMTRPELNFKLSHGFEPWNG
                     SEASLWSLPDVHKVSVLGNQETHLWQAEVTGGITSYEQMVEAELQIQEKIHREAKIHE
                     YKDCMETFYPNSQHTRNQTSQSYENPFGWEEFRKAFYYQSTLTQHQRFHIGEKLYDSP
                     QCWEIFPWKSQLSVHETFHAGERRYECEECRKSFHRKANLIRHQRRTHSREKPYECIE
                     CGKTFYCKSDVTRHQRRTHSREKPYECVECSKTFYCKSYLIRHQSRTHSREKPYECTE
                     CTKTFYCKSDLTRHQTTHSGEKPFECNECSKTFYYKSDLANHQKTHTDDNPYECKECR
                     KTFCSKSSLNQHHRIHTGEKPYECNECKKSFNSKSNLTEHQRRTHTREKPYECNECWK
                     SFYCRSELTNHQRTHTVERYYECKECRKNFYCKSNLNQHQRTHTGEKPYECKDCNKAF
                     YCKSNLNQHQRTHTGEKPFACKDCSKAFYCKSSLVKHQKIHSGEKPYECEECRKTFFQ
                     KSDLTRHQRTHTGEKPYECKDCSKTFYCKSNLNQHQRTHTHEKPYECKECRETFYSKS
                     ELTEHQRTHTDEKPYVMFNIDCQLDKIWDHLGDRPVGMPVKDYLD"
     exon            144..270
                     /gene="2610008E11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            271..363
                     /gene="2610008E11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            364..456
                     /gene="2610008E11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            457..551
                     /gene="2610008E11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            552..4229
                     /gene="2610008E11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3768..3773
                     /regulatory_class="polyA_signal_sequence"
                     /gene="2610008E11Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      3793
                     /gene="2610008E11Rik"
     regulatory      4208..4213
                     /regulatory_class="polyA_signal_sequence"
                     /gene="2610008E11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4229
                     /gene="2610008E11Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggcctttgtc tgtccccggc catcttagat ctgtagcctc atccagttcc gaaggatcgg
       61 aaatcactga ggcccctgtc tcctgtgaca gtcgcggtgg ggaggcccgc gcaggacgca
      121 ggatgtcggc agagcctgtc atggagtcgg tgtcattcga ggacattgct gtgttcttca
      181 cctgggagga gtggcaggac ctagacattg ctcagaagtt gctctacagg gatgtgatgc
      241 tggagaacta cagtagcctg gtgtccttgg gctgctgtgt gatcaaacct gagttgatcc
      301 tcatgttgga acgtgaattt gggccatgga gggtagcaga tacctcagtc tggaaccttc
      361 cagggtactg catgaccaga ccagaattga acttcaagtt atcgcatgga tttgagccgt
      421 ggaatggctc agaagcctcg ctttggagcc tcccagatgt ccataaggta agtgtcctgg
      481 gaaatcaaga gacacacttg tggcaagctg aagtcactgg tggcattaca tcctatgaac
      541 agatggttga agcagaacta cagattcaag aaaaaattca tcgagaggca aaaatacatg
      601 aatataaaga ttgtatggaa acattttatc cgaattcaca gcacaccagg aatcagacat
      661 ctcagtcata tgagaacccc tttggatggg aggaatttag aaaagctttc tattatcaat
      721 caaccctcac tcaacatcaa agatttcata taggcgaaaa actctatgac tctccacagt
      781 gctgggaaat tttcccctgg aagtcccaac tcagtgtaca tgagacattt catgcaggtg
      841 agagacgcta tgagtgtgaa gaatgcagga agtcttttca tcggaaggca aaccttattc
      901 gacatcagag aagaacacat agcagagaga agccgtatga atgtatagaa tgtgggaaaa
      961 ctttctactg taagtcagat gtcactcgac atcagagaag aactcacagt agagaaaaac
     1021 cctacgaatg tgtagaatgc agtaagactt tctactgtaa gtcatacctc attcgacatc
     1081 agagtagaac tcacagtaga gagaagccct atgagtgtac agaatgtact aaaacttttt
     1141 actgtaaatc agatcttact cgtcatcaaa caactcatag tggggaaaag ccttttgaat
     1201 gtaatgaatg ctctaaaaca ttctactata aatcagacct cgctaatcat cagaaaacgc
     1261 atacagatga taatccctat gaatgtaaag aatgtagaaa aactttctgc tccaagtcaa
     1321 gcctcaatca gcatcatagg attcatacag gtgagaagcc ctatgaatgt aatgaatgta
     1381 agaaaagttt caattctaag tcaaatctca ctgagcatca gagaagaact cataccagag
     1441 agaaacccta tgaatgtaac gaatgttgga aatccttcta ctgtaggtca gaacttacga
     1501 atcatcagag gactcataca gttgagaggt actatgaatg taaagagtgt agaaaaaatt
     1561 tctactgtaa gtcaaacctc aatcaacatc aaagaactca caccggagag aaaccgtatg
     1621 aatgtaaaga ctgcaacaaa gctttctatt gtaagtcaaa cctcaatcaa catcaaagaa
     1681 ctcatacagg tgaaaaacct tttgcatgta aagactgtag taaagctttc tattgtaagt
     1741 caagccttgt taaacatcaa aaaatccatt caggtgagaa gccatatgaa tgtgaagaat
     1801 gtagaaaaac ttttttccaa aagtcagacc tcactcgaca tcagaggaca catacaggtg
     1861 aaaagcccta tgagtgtaaa gactgtagca aaactttcta ttgtaagtca aacctcaatc
     1921 aacatcagag aactcacacg catgaaaaac cttatgaatg taaagaatgt agggaaacat
     1981 tctattctaa gtcagagctt acagaacatc aaagaactca tacagatgaa aaaccatatg
     2041 tgatgtttaa tattgattgt caactcgaca agatctggga tcatctggga gacaggcctg
     2101 taggcatgcc tgtgaaagat tatctagatt aagttagcct ttggagatgt atgtgattat
     2161 cattatttga ttaattgaaa taggaagacc tatcataaat atgtgtggca ccagtccctg
     2221 ggttgggatt atgtactgca ggaaaaggga tggcaccatt ctgtagacta gagttctaga
     2281 ctacatgaaa agaaggaagg tagattatgc atgaccattt gctgttttct gcttcctgtc
     2341 tggatgccac ttgtcaaaat gcctcaagct catgccacaa gaagttctct accaatatac
     2401 gattaggatt gtacatcagg tgtgaagtac tgtgacagca aaaagtaact aatacaggaa
     2461 attggttttg agaagtgagg ccactgctct gataaacttg actatgtgac tcttaggcca
     2521 ctagaaatgg ctttcatgag gaatgtagaa gatttggaac tttgggctaa taaaatcttt
     2581 gaatgctatg ctacagagct taatgggcca ttgtggtaga agtttataag tacagactat
     2641 ggaggcctgg ctcacaaagc ttcagagggg aacaagcatt gtcaagaact gggctagaga
     2701 caatttgtgt gaccctttcc taaggatctg gcttcattct acctgtgatc tgagaacttg
     2761 aataacaatt taaaggaaaa gtactcattt attgggtgaa gaaaattacc aaaaaggtat
     2821 atattcaggc ttgtggcaca gctcctagta acttctctta taaaagttta caatgaaaaa
     2881 gttccattgt gctgaagata aatacaaaaa tgattaaaac ttggagtcta tcaaggatta
     2941 gaaagctaaa gcaaggcaaa agctgcaggc aaggcaggta tggaagaaga ggctttgtta
     3001 aaagagaaac caccctgctc tgcccccaga acaataggaa atgtgtctgg atagccccac
     3061 tgtccctatc taaggtttca gcttgtaaaa aatttggact tatttgaaag aagagaacct
     3121 ggactgagaa tatagctgaa gggattccct gctccctgaa gacaactccc taggggaagt
     3181 gtttctgtag ggtcagcaca ctgtgggtga tagctttgtt ccaagaagat atatttctaa
     3241 ctagcaacag ctcttggaag ctttgtggat gtgatactag tttcataggt atgaaagatg
     3301 caacattgaa ggggtcaagt agatttgctc caaagtgtca gaatgcagct gagactaaac
     3361 attgtatgtc taaactggag tctctaccgg aaggctctga atgcccagtg catggacctg
     3421 tgaaggtaaa ctataatttg ccttggagac tccagtatat aagtgatgcc aggagcatgg
     3481 ggttatccac caaggaaagc tacaggcatg gagtggggcc agttgcgcag cagagatgga
     3541 agagtgaggc ttctcaagta ctttaaattc caggggattc tattacaagt ctcagatgta
     3601 gtggacatgc tccagtaaga tatgttgttt tccctgctgg gtttctgccc tagttttttc
     3661 ctttgggaat gggaatgttt atgctttcat gtattagaac catgcaactt gctttttggt
     3721 attaaagggc ctcacagagt atttcagatg aaacttggac tttggatatt aaaacattgt
     3781 tggaattctt gaagactagg gatttttttg tattgtatat gacccacttt atgaaatggc
     3841 catcagctta tggggacaag agaggaaaag ttatgactca acagtgataa tcatgtcatg
     3901 ttgacaagga gtacagttat ggtggctaat attgtcagct tgactgaatc tggaatcacc
     3961 tggtagatgg acgtctgaga atatctgggg gaaattgtct taagttaatt ggcatggaaa
     4021 gactgacttt aaatgtagta ctccatgggc tgaggtctta gactacatgt aaagaagaaa
     4081 gatgactaag aatgaacatt cattgttctc tgttcttgac tgtggatgcc tctggaccag
     4141 ctgcctcaag ctcctgccac tgtaacttcc ctgtccagat gtattctatc tttgaactgt
     4201 gagccaaaat aaatccatca ttaatttgc
//
