LOCUS       NM_001033164            1232 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus RIKEN cDNA 2510002D24 gene (2510002D24Rik), mRNA.
ACCESSION   NM_001033164 XM_622812 XM_897779 XM_903718 XM_904041 XM_913860
            XM_922927
VERSION     NM_001033164.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1232)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1232)
  AUTHORS   Kragness,S., Clark,Z., Mullin,A., Guidry,J. and Earls,L.R.
  TITLE     An Rtn4/Nogo-A-interacting micropeptide modulates synaptic
            plasticity with age
  JOURNAL   PLoS One 17 (6), e0269404 (2022)
   PUBMED   35771867
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1232)
  AUTHORS   Kragness,S., Harrison,M.A.A., Westmoreland,J.J., Burstain,A. and
            Earls,L.R.
  TITLE     Age-dependent expression pattern in the mammalian brain of a novel,
            small peptide encoded in the 22q11.2 deletion syndrome region
  JOURNAL   Gene Expr Patterns 28, 95-103 (2018)
   PUBMED   29571919
REFERENCE   4  (bases 1 to 1232)
  AUTHORS   Devaraju,P., Yu,J., Eddins,D., Mellado-Lagarde,M.M., Earls,L.R.,
            Westmoreland,J.J., Quarato,G., Green,D.R. and Zakharenko,S.S.
  TITLE     Haploinsufficiency of the 22q11.2 microdeletion gene Mrpl40
            disrupts short-term synaptic plasticity and working memory through
            dysregulation of mitochondrial calcium
  JOURNAL   Mol Psychiatry 22 (9), 1313-1326 (2017)
   PUBMED   27184122
REFERENCE   5  (bases 1 to 1232)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   6  (bases 1 to 1232)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   7  (bases 1 to 1232)
  AUTHORS   Lund,J., Chen,F., Hua,A., Roe,B., Budarf,M., Emanuel,B.S. and
            Reeves,R.H.
  TITLE     Comparative sequence analysis of 634 kb of the mouse chromosome 16
            region of conserved synteny with the human velocardiofacial
            syndrome region on chromosome 22q11.2
  JOURNAL   Genomics 63 (3), 374-383 (2000)
   PUBMED   10704284
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK160192.1 and AK153794.1.
            
            On Mar 1, 2007 this sequence version replaced NM_001033164.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK160192.1, AK153794.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                AK160192.1         2-12
            12-1053             AK153794.1         3-1044
            1054-1232           AK160192.1         1060-1238
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 11.67 cM"
     gene            1..1232
                     /gene="2510002D24Rik"
                     /gene_synonym="2410043I01Rik; DXMgi27; Pants"
                     /note="RIKEN cDNA 2510002D24 gene"
                     /db_xref="GeneID:72307"
                     /db_xref="MGI:MGI:1919557"
     exon            1..40
                     /gene="2510002D24Rik"
                     /gene_synonym="2410043I01Rik; DXMgi27; Pants"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..334
                     /gene="2510002D24Rik"
                     /gene_synonym="2410043I01Rik; DXMgi27; Pants"
                     /note="UPF0545 protein C22orf39 homolog;
                     plasticity-associated neural transcript"
                     /codon_start=1
                     /product="synaptic plasticity regulator PANTS"
                     /protein_id="NP_001028336.1"
                     /db_xref="CCDS:CCDS28029.1"
                     /db_xref="GeneID:72307"
                     /db_xref="MGI:MGI:1919557"
                     /translation="MAVAGSWQPPRPCEVYRAEWELCRSVGHVLHHYYVHGKRPDCRQ
                     WLRDLTNCREWEESRSAEAQRSLCESEQVRVQAAQKHTLVWALRQRPPTDWNLPLPQE
                     KDK"
     exon            41..208
                     /gene="2510002D24Rik"
                     /gene_synonym="2410043I01Rik; DXMgi27; Pants"
                     /inference="alignment:Splign:2.1.0"
     exon            209..1232
                     /gene="2510002D24Rik"
                     /gene_synonym="2410043I01Rik; DXMgi27; Pants"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacacggggc ctggacatgg cggtcgcagg gagctggcag cctccccggc cgtgcgaggt
       61 ctaccgcgcc gagtgggagc tctgccgcag cgtcgggcac gtcctacacc actactacgt
      121 ccacggcaag cggccggatt gcaggcagtg gctccgcgac ctgactaact gccgcgagtg
      181 ggaggagagc cgcagcgccg aggcccagcg atccctctgt gagagcgagc aggttcgggt
      241 ccaggctgct cagaagcaca ccttggtatg ggccttgagg caaaggcccc ctacggactg
      301 gaacctccct ctaccacagg agaaggacaa gtgataagca actgcaaccc tacccttgac
      361 ctagactttg actggctctt acttgacctg gaacacagag caaagcattt ccagccctaa
      421 ttgcctgctg cccactggat ctgggcattt catcactgta atactctgaa agacacctgt
      481 gtgcacatgc tggaagccaa gcactgaggc aggtgtctgt gagcactcag gtgggtccat
      541 tctgtccatg ccatctcccc tgagaacatc aacaccagat gtggcagccg agagttgtga
      601 aaatctcaag tacacagtgg cagccccaac ctgtgtggat ccagggcaca gtagttagaa
      661 taaggttgct agactacctt attttgatta tgaatgaccc tccttggcca tgagagatgg
      721 actgcaatgt cttgtctagt gattatcgtg gtatgcaagt gcggagctca tgcttgctca
      781 gcttccctgg agacacggaa gagcatgctc agtgggtagg caacttgtcc tctgcaccag
      841 caccttttac tggttttgca gactttgaaa gaaagagaga gagagagaga gagagagaga
      901 gagagagaga gagaactggg tggtggtggc ccacgccttt aatcccagca ctcgggagac
      961 agaggcaggc cagcctggtc tacagagtga gttccaggac agccaggagc tacacagaga
     1021 aaccctgtct cgagaaaaaa aaaaaaaaaa aaaaacaaca acaaaaaaaa gaaagacaga
     1081 cagacagaca gcattgcagg aaccaaggag tctggaatca agacatccaa gtcccaaggc
     1141 acagacagag ctcaggtcca aggactatgg ggtttaggtc tcctgatttc tcctcattgt
     1201 taatgtattt ttttaaaaaa gctgcttcac at
//
