LOCUS       NM_001201333            1586 bp    mRNA    linear   ROD 24-SEP-2024
DEFINITION  Mus musculus ciliary microtubule inner protein 5 (Cimip5),
            transcript variant 2, mRNA.
ACCESSION   NM_001201333 XM_920599
VERSION     NM_001201333.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159312.2.
            
            On Dec 21, 2022 this sequence version replaced NM_001201333.1.
            
            Transcript Variant: This variant (2) lacks an alternate exon that
            results in a frameshift in the central and 3' coding regions,
            compared to variant 1. The encoded isoform (2) has a distinct
            C-terminus and is longer than isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ942392.1, CX240116.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-103               AC159312.2         167167-167269
            104-327             AC159312.2         167370-167593
            328-544             AC159312.2         171485-171701
            545-1586            AC159312.2         172723-173764
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 8.04 cM"
     gene            1..1586
                     /gene="Cimip5"
                     /gene_synonym="2410004P03Rik"
                     /note="ciliary microtubule inner protein 5"
                     /db_xref="GeneID:73667"
                     /db_xref="MGI:MGI:1920917"
     exon            1..103
                     /gene="Cimip5"
                     /gene_synonym="2410004P03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            104..327
                     /gene="Cimip5"
                     /gene_synonym="2410004P03Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..727
                     /gene="Cimip5"
                     /gene_synonym="2410004P03Rik"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="uncharacterized protein C2orf50 homolog isoform
                     2"
                     /protein_id="NP_001188262.1"
                     /db_xref="CCDS:CCDS79107.1"
                     /db_xref="GeneID:73667"
                     /db_xref="MGI:MGI:1920917"
                     /translation="MGSQHRGLPRTTSAGYKPPPTRQLASISAALGDGPAASRALAGG
                     CQGTPALGVQQDQLWRELVEAEARGQRRWEIRRSLRSCLPVCPSSQIPSPALPTGRWA
                     AGWTHPWGKPSATWTSSLWKALGRGSRMMSCSQCSLGAGHSRQFLGPTGSRLGSTREC
                     QGQLNQESLQETTAYSVCFTLEATASPTYPLPPPHLQTLQEGACF"
     exon            328..544
                     /gene="Cimip5"
                     /gene_synonym="2410004P03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            545..1586
                     /gene="Cimip5"
                     /gene_synonym="2410004P03Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1567..1572
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cimip5"
                     /gene_synonym="2410004P03Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1586
                     /gene="Cimip5"
                     /gene_synonym="2410004P03Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtcaacaca agcagggctg caaaacacag ctgggcgcag atgctgcccc agcctggaga
       61 gtttttgtcc cccatcagtc actctctctg agctcgaaat ccgtccccca tgggcagcca
      121 acatcgtggg ctaccaagaa ccacatccgc tgggtacaaa ccgcccccta ccaggcagct
      181 tgcctcaatt tctgcggccc tgggggatgg ccctgctgca agcagggctc tcgccggtgg
      241 ttgccagggg accccagccc tgggtgtgca acaggaccag ctgtggaggg agcttgtgga
      301 agccgaagca cgaggccaga ggcgttggga aataagaagg agcctcagga gctgcctgcc
      361 agtgtgccct tcttctcaga taccttcccc tgctctacca accgggaggt gggcagcagg
      421 gtggacacac ccctggggaa agccctcggc cacatggact tcttctttgt ggaaggcact
      481 cggaagagga agccggatga tgagctgcag ccagtgtagt ctcggggctg gccacagcag
      541 gcagtttctt ggaccaacag gttcccggtt gggcagcacc agagagtgcc agggccagct
      601 gaaccaagag agcctgcagg agactacggc atacagtgtc tgctttactc tggaggccac
      661 agccagcccc acataccctc tacctccgcc tcatcttcag actctccaag aaggtgcctg
      721 cttctgacct ccactgtcac atccacaggc tgagagggga tggagacgga gggtccagcc
      781 accactgtct tctttctctg gatccagaac aaggaaatct agatgagccg ggtggcacca
      841 aacctccaca tcatcactgg aaaagtctag ggagcttcgt ccaggacagt caaacagggc
      901 agcgcagagc ccacaggctg ggtggcacca ggggacgaga acggcaggaa gggccatggc
      961 agaggatctc ccttcagttc taaccactgc ttctttgaga gtacttgcct ccctctgctc
     1021 tgtgacagaa gctgcccatc tactccagtg ataaaggcac ggcgtgacct ttaggcctct
     1081 tcctgtacta gaaatgatga ggcagtgtag gagggacaca tgagccagcc tgagtgtggg
     1141 acggtgatag gcagcctgtt ttggttgaat gaggcttgct ccggtgaccc agtagagaac
     1201 tccacaaggg acagaaaagt gagccatgtt cccagaacca ggtgtgtgaa accacagagc
     1261 tcccaacttc ataattctgt gactaccagt cacgcagaca atgtcccaag cttctggtat
     1321 tctggctaga ctccaccctc acagttacct gactatagcc aggtatgctc ctccccacag
     1381 ttacctggca acagcaagat agctcagccc actataaaag gagctgcttg gtccctcctt
     1441 gctctcttta agctctcacc tttcttactc tctagccctc cttctctctt tcctttcccc
     1501 cctctctcca cgtggacatg gccagcctct ctctctctat cttctctttt tcccctgcct
     1561 ttctacaata aagctctaaa accaca
//
