LOCUS       NM_025555               1547 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 2410004B18 gene (2410004B18Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_025555
VERSION     NM_025555.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Heydarian,M., Luperchio,T.R., Cutler,J., Mitchell,C.J., Kim,M.S.,
            Pandey,A., Sollner-Webb,B. and Reddy,K.
  TITLE     Prediction of Gene Activity in Early B Cell Development Based on an
            Integrative Multi-Omics Analysis
  JOURNAL   J Proteomics Bioinform 7 (2014)
   PUBMED   25544807
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123684.8.
            
            On Sep 28, 2017 this sequence version replaced NM_025555.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK019404.1, AK010378.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-315               AC123684.8         86759-87073         c
            316-514             AC123684.8         85991-86189         c
            515-1547            AC123684.8         80258-81290         c
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 71.03 cM"
     gene            1..1547
                     /gene="2410004B18Rik"
                     /gene_synonym="4930572C24Rik"
                     /note="RIKEN cDNA 2410004B18 gene"
                     /db_xref="GeneID:66421"
                     /db_xref="MGI:MGI:1913671"
     exon            1..315
                     /gene="2410004B18Rik"
                     /gene_synonym="4930572C24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..588
                     /gene="2410004B18Rik"
                     /gene_synonym="4930572C24Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UPF0690 protein C1orf52 homolog"
                     /codon_start=1
                     /product="UPF0690 protein C1orf52 homolog isoform 1"
                     /protein_id="NP_079831.1"
                     /db_xref="CCDS:CCDS17898.1"
                     /db_xref="GeneID:66421"
                     /db_xref="MGI:MGI:1913671"
                     /translation="MAAEEKDPLSYFAAYGSSSSDSSDENSEPEDAGRKEAASAPTTG
                     GRGKQAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNC
                     VPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETVESDDDK
                     DERASKIRRVEPGEAAKKKK"
     exon            316..514
                     /gene="2410004B18Rik"
                     /gene_synonym="4930572C24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            515..1547
                     /gene="2410004B18Rik"
                     /gene_synonym="4930572C24Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      976..981
                     /regulatory_class="polyA_signal_sequence"
                     /gene="2410004B18Rik"
                     /gene_synonym="4930572C24Rik"
                     /note="hexamer: AATAAA"
     polyA_site      995
                     /gene="2410004B18Rik"
                     /gene_synonym="4930572C24Rik"
                     /note="major polyA site"
     regulatory      1524..1529
                     /regulatory_class="polyA_signal_sequence"
                     /gene="2410004B18Rik"
                     /gene_synonym="4930572C24Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1547
                     /gene="2410004B18Rik"
                     /gene_synonym="4930572C24Rik"
ORIGIN      
        1 ggcttccggc ttccggccga gagagggtgg gaacccgcgg ccgtcatggc agccgaagag
       61 aaggacccgt tgagctactt cgcggcttac gggagcagca gctccgactc gtcggatgag
      121 aacagcgagc cggaagacgc gggtcgcaag gaggcggcct cggctccgac gacgggcggc
      181 cgcgggaagc aggcggagaa gcggctgccc ggcccggacg agctgttccg cagcgtgacc
      241 cgcccggcct tcctctacaa cccgctcaac aagcagatcg actgggagcg gcatgtggtg
      301 aaagcgccgg aggagcctcc aaaggagttc aagatctgga agtccaactg cgtgccgccc
      361 ccagagacct acactactga gaagaagccg ccgccgccag agctggacat ggcgatcaaa
      421 tggtcgaata tctatgaaga caatggagac gatgccccac agaacgccaa gaaagccagg
      481 cttctgcctg aaggggagga gacagtggaa tcagatgatg acaaagatga gcgggcatct
      541 aagattcgca gagtggagcc aggagaagca gccaagaaga agaagtagag aattgtgact
      601 cctgagatgt gtcgttgagt ggagtgtttg cttttgtgcg ttactatgac agacatctcc
      661 atgaacgtat ttatgttaac gaactaatga gtgtcgcctc aagactttcc actgtagaat
      721 tcactttttt tatttaaaac ctgtacgtat ttacaactct aatggtgacc tgtgattgtg
      781 aactgacagt acttggaagc attctggtta tcacaaaatt ggtgacaggc tttgagagtt
      841 tgtcacatgg acatgccaat gttctatgaa ccttttataa aggaatatat ttttaaagta
      901 aatatattgt attgtactgt gaacttgtgg gtgcttttca ttagtatctg tacagtgtaa
      961 atagatgatc atggaaataa aattacttaa tccaaccttg ttattactga atgccactaa
     1021 cataagtatt tgtgacaggc agcctgcttg ccctgtgacg ttttgattca cagtggggat
     1081 tagcatgtag ggagagcctc ccatgctcgg gtgccttgtg catacttctc tcctacagtc
     1141 ctgggaggaa agcagacgtg agcgtcctca ggtttgtggt gagagcttga ggaactgggc
     1201 agaggggtac acagcagtga gtgaagagga gcggtcacgc aggactgact ccagtcagat
     1261 gaagccacct gtcactcgtc agacttcagt cgtttgccaa gaacattatc atctctgcca
     1321 tgtgcacttg tattagggag gtctcctact ctgattctgc agctgcactg ataaatgcct
     1381 tatagtgtga gtataagtat tcatttcttc attaggtaga ctgaagatga ggctcctctg
     1441 tgaaagatga gcaaattcag aaaagaacat aaggtaacca gttaaatttg agtctgtctg
     1501 agtatatgtg atataagaga cacattaaaa accatctgaa attctaa
//
