LOCUS       NM_175107               2653 bp    mRNA    linear   ROD 31-MAY-2024
DEFINITION  Mus musculus RIKEN cDNA 2310022A10 gene (2310022A10Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_175107 XM_992236 XM_992260 XM_992287 XM_992305 XM_992332
            XM_992364
VERSION     NM_175107.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2653)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   2  (bases 1 to 2653)
  AUTHORS   VanBuren,V., Piao,Y., Dudekula,D.B., Qian,Y., Carter,M.G.,
            Martin,P.R., Stagg,C.A., Bassey,U.C., Aiba,K., Hamatani,T.,
            Kargul,G.J., Luo,A.G., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Assembly, verification, and initial annotation of the NIA mouse
            7.4K cDNA clone set
  JOURNAL   Genome Res 12 (12), 1999-2003 (2002)
   PUBMED   12466305
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB853451.1, AK077369.1, BE854222.1, BX522780.1, BQ560353.1 and
            BU555303.1.
            
            On Nov 17, 2012 this sequence version replaced NM_175107.4.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC023369.1, SRR1660815.278933.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-325               BB853451.1         2-326
            326-1236            AK077369.1         218-1128
            1237-1615           BE854222.1         47-425
            1616-2019           BX522780.1         118-521
            2020-2558           BQ560353.1         56-594
            2559-2653           BU555303.1         120-214
FEATURES             Location/Qualifiers
     source          1..2653
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 15.93 cM"
     gene            1..2653
                     /gene="2310022A10Rik"
                     /note="RIKEN cDNA 2310022A10 gene"
                     /db_xref="GeneID:66367"
                     /db_xref="MGI:MGI:1913617"
     exon            1..64
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            65..185
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..1382
                     /gene="2310022A10Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C19orf47 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C19orf47 homolog isoform
                     1"
                     /protein_id="NP_780316.3"
                     /db_xref="CCDS:CCDS21026.1"
                     /db_xref="GeneID:66367"
                     /db_xref="MGI:MGI:1913617"
                     /translation="MGFRIGENLLFNLRKAPGSRVKARKTMVSVTMATSEWIQFFKEA
                     GIPPGPAVNYAVMFVDNRIQKSMLLDLNKEIMNELGVTVVGDIIAILKHAKVVHRQDM
                     CKAATESVPCNPSPLQGELRRGASSAASRMIANSLNHDSPPHTPTRRSDNSTSKISVT
                     VSNKMAAKSAKAAALAHREEESLVVPTKRRRVTAEMEGKYIIHMPKGTTPRTRKILEQ
                     QQAAKGLHRTSVFDRLGAESKADTTTGTKPTGVFSRLGATPEMDEDLAWDSDNDSSSS
                     SVLQYAGVLKKLGRGPTKASAQPALTVKAKATSSATTTATTPKLRRLALPSRPGLEKK
                     PDSLPKVSILQRLGKAAVVSEAQDSQVTSTKSKSSAEVKFAIKRTLVGPRGSSSSESL
                     GAQMDHAGTVSVFKRLGQRTF"
     exon            186..237
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            238..325
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            326..440
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            441..522
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            523..660
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            661..810
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            811..881
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            882..2644
                     /gene="2310022A10Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2620..2625
                     /regulatory_class="polyA_signal_sequence"
                     /gene="2310022A10Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2644
                     /gene="2310022A10Rik"
                     /note="major polyA site"
ORIGIN      
        1 gacagttggc gcgacccgga gggcgggcgg gcgcctcgtg ggggtgcggg ccccagagtg
       61 ccaggatcat catgggaagc cactgaggta tgcttacctc agtccctggc acagagtgaa
      121 cactcgtgag cacctgctcc atgggcttca gaatcggaga gaacttgctt ttcaatctca
      181 gaaaggctcc aggaagcagg gtcaaggcca ggaagacgat ggtctcagtg actatggcca
      241 cttccgagtg gatccagttc ttcaaggaag ccggcattcc cccaggacct gctgttaatt
      301 acgctgtgat gtttgtggat aatcggatcc agaagagcat gctgctagat cttaataaag
      361 aaatcatgaa cgagctgggt gtgaccgtcg tgggtgatat cattgccatc ctcaagcatg
      421 ccaaggtggt acaccgccag gacatgtgca aagcagccac tgagtcagtg ccctgcaacc
      481 ccagcccgct ccagggtgag cttcgccgag gcgcttctag tgccgcttct cgaatgattg
      541 ccaacagcct gaaccatgac tctccacccc atacccccac acggcggtca gacaacagca
      601 cctccaagat ctccgtcact gtgtccaaca agatggcagc gaagagtgcc aaggctgccg
      661 ctctggccca cagggaggag gaaagcctgg ttgttcccac caagcggcgg cgggtcacgg
      721 ctgagatgga gggaaagtac atcatccaca tgcccaaggg gaccacgccc cgcacccgga
      781 agatcctgga gcagcagcag gcagcaaaag gtctccatag aacatctgtg tttgatcgcc
      841 ttggtgctga gtccaaagca gacacgacca cagggactaa gcccacagga gttttcagcc
      901 gcttaggggc caccccagag atggatgagg atctggcctg ggacagtgac aatgacagca
      961 gcagtagctc tgtcctgcag tatgctgggg tcctgaagaa actaggacga ggcccaacca
     1021 aggccagtgc ccaaccagca ctgactgtca aagccaaggc cacaagctct gcaaccacca
     1081 cagctaccac tccaaagctg cggcgcctgg cacttccctc tcgccctggg ctggagaaga
     1141 agccggattc cctgcccaaa gtcagcatcc ttcagagact gggcaaggct gccgttgtgt
     1201 ccgaggcaca ggacagccag gtcacaagca ccaagagtaa gtcctcagct gaggtcaagt
     1261 tcgccattaa aaggactctg gtagggcccc gggggagcag ctccagcgag agccttggtg
     1321 cccagatgga ccatgcaggc actgtgagcg tgttcaaaag actgggccaa aggactttct
     1381 agccacatgc agggtggggt gcagcaggga atggcaggcc agctcctgct ttcatccctt
     1441 cagcctttct tgagggcaca cctgccctcc cacggagctc tagaaggcac aaggcttggc
     1501 tctctccagc atttagctgg ttccaagcac tcgggaacac agccattttt cctggttttt
     1561 gatgttcccg cagcctgatg gtgcctgctt tgggacttcc cttcttccct gccctctgtc
     1621 ctctgcacag taactgtggc cttggcatag ttcccttttc tacctcttcc ccaagccaag
     1681 ggacctgttt ctttcatgca gtccaccctg atagcagcat ctgttgtgac cctcctgttg
     1741 tgaccgcccc accacaaagg tgtcacctgg ggggtctccc ccaggcccgc cctgcgcctt
     1801 ccctccctct tctccccctt ccccgcctgc tgtgctgtct ctctccctct cttccctctt
     1861 ttcatttctc ttctgttttc tgtccctgtg gcaaggcccg accgtccgct gcatcctgcc
     1921 tgaccctcct gcacctctgg cctcccagcg gccccctcgt cgacggtggc ggcgaacctg
     1981 taaagactgt tagctgcctt ccattcccag gctggaggga cttccccaga cctggcctgc
     2041 agccggggca cctccgtttc cctgccctga ccgtcttttt ctttgatggg tggtgggcaa
     2101 cagacatggg aaggggcggg tgctgaggaa aggtgactgc tgttttaata tatttttgtg
     2161 actttgagac tgtttccttc cttcctcctc cttcagtgga gtcacaggtc tgtggctcac
     2221 acggaccctg tggggcagta ggcactggtg aaagactggg actgaagggg atgatggcga
     2281 cagttctcat ggtgaggcct cctcctcccc ttcaaactgc agtgcctgtc actacggtgt
     2341 cccatcaatg tcaccattct gccactctgc ctgttggtag cttgctttta ttttgagaca
     2401 ggatctcact ctgtagccct ggcttccctg gaacttgcta tgtagatcag gctggcctcc
     2461 aactctgaag agccccgctt ccctctgcct cccaagcccc aagtgctgga ttaaaggcgt
     2521 gcaccacagc cagctgcttg ccttcttttg ttttttgaaa cccaaggtgg ctcaaacttg
     2581 ctgtatagtt gaggaagact tagaacgtct ctctttacaa ataaatttat tttgtgtgta
     2641 taaaaaaaaa aaa
//
