LOCUS       NM_024461                991 bp    mRNA    linear   ROD 16-FEB-2025
DEFINITION  Mus musculus allregulin (Arln), mRNA.
ACCESSION   NM_024461
VERSION     NM_024461.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Anderson,D.M., Makarewich,C.A., Anderson,K.M., Shelton,J.M.,
            Bezprozvannaya,S., Bassel-Duby,R. and Olson,E.N.
  TITLE     Widespread control of calcium signaling by a family of
            SERCA-inhibiting micropeptides
  JOURNAL   Sci Signal 9 (457), ra119 (2016)
   PUBMED   27923914
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 991)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 991)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   4  (bases 1 to 991)
  AUTHORS   Yoshida,S., Mears,A.J., Friedman,J.S., Carter,T., He,S., Oh,E.,
            Jing,Y., Farjo,R., Fleury,G., Barlow,C., Hero,A.O. and Swaroop,A.
  TITLE     Expression profiling of the developing and mature Nrl-/- mouse
            retina: identification of retinal disease candidates and
            transcriptional regulatory targets of Nrl
  JOURNAL   Hum Mol Genet 13 (14), 1487-1503 (2004)
   PUBMED   15163632
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK007721.1 and BC091739.1.
            
            On Jan 30, 2007 this sequence version replaced NM_024461.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091739.1, AK170776.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-517               AK007721.1         2-518
            518-991             BC091739.1         486-959
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 53.75 cM"
     gene            1..991
                     /gene="Arln"
                     /gene_synonym="1810037I17Rik; 5730414I01Rik; Aln"
                     /note="allregulin"
                     /db_xref="GeneID:67704"
                     /db_xref="MGI:MGI:1914954"
     exon            1..260
                     /gene="Arln"
                     /gene_synonym="1810037I17Rik; 5730414I01Rik; Aln"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..261
                     /gene="Arln"
                     /gene_synonym="1810037I17Rik; 5730414I01Rik; Aln"
                     /note="uncharacterized protein C4orf3 homolog;
                     another-regulin; SERCA regulator ALN;
                     sarcoplasmic/endoplasmic reticulum calcium ATPase
                     regulator ALN; SERCA regulator ARLN"
                     /codon_start=1
                     /product="sarcoplasmic/endoplasmic reticulum calcium
                     ATPase regulator ARLN"
                     /protein_id="NP_077781.1"
                     /db_xref="CCDS:CCDS38619.1"
                     /db_xref="GeneID:67704"
                     /db_xref="MGI:MGI:1914954"
                     /translation="MEVSQAASGTDGVRERRGSFEAGRRNQDEAPQSGMNGLPKHSYW
                     LDLWLFILFDLALFVFVYLLP"
     exon            261..976
                     /gene="Arln"
                     /gene_synonym="1810037I17Rik; 5730414I01Rik; Aln"
                     /inference="alignment:Splign:2.1.0"
     regulatory      391..396
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arln"
                     /gene_synonym="1810037I17Rik; 5730414I01Rik; Aln"
                     /note="hexamer: ACTAAA"
     polyA_site      416
                     /gene="Arln"
                     /gene_synonym="1810037I17Rik; 5730414I01Rik; Aln"
     regulatory      946..951
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arln"
                     /gene_synonym="1810037I17Rik; 5730414I01Rik; Aln"
                     /note="hexamer: AATAAA"
     polyA_site      970
                     /gene="Arln"
                     /gene_synonym="1810037I17Rik; 5730414I01Rik; Aln"
                     /note="major polyA site"
ORIGIN      
        1 agactgggcg cgaagcggtc ttcaggtttg gtctcagttg cgcggaagtg aaacgacgcg
       61 gagatggagg tgagccaggc ggcgtctggt accgacggtg tccgggaacg gaggggctcg
      121 ttcgaagctg gaaggaggaa ccaagatgag gcacctcagt ccgggatgaa cgggcttccg
      181 aaacactcct actggctgga tctctggctc ttcatccttt tcgacctggc cttgttcgtc
      241 ttcgtgtacc tcttgccctg accggtttgc tgagtcaaga atggggcttc tggagtgaat
      301 cttgaaaacg actatagact cttgaatgaa gaggactcca gcagctgact tcggcacctc
      361 tatctaacct tttcttcagc ccttgacctc actaaagtac tatcatatgt ttaaaacctg
      421 tttttcatgg ttgaagtaat gattgtagct aaatgataga taatatatat ttttaataat
      481 gtctgtaact taagtactta tgggaaataa atgtatgtaa aaaaaaaaag ttatctttgt
      541 gaagcttact ttctcaaata ttgttttaaa actatgctat tataaaataa ttatctagag
      601 ttgaataggt agcacttact cagaaaggcc acagtcccaa agcagctact agaaacattt
      661 tggaagctgt tccttgtcat cttaagacct gggtgattag aaattcttta ctgttggttt
      721 tagtgctatt cagtatatga gaactgtcta aaatactcag agggggtgtt cttctccctt
      781 ataattcaca ctatttggtg aactgtttac agttgtctta agatactgtt gcatttgctt
      841 gggtaatttt tgtgcaaggt gtaactgaag tatgcgtatt agcacacagg gccgaggtga
      901 ctcttgagtt caccacactc tgggacctgc ttactaattt tctctaataa atgtttaatc
      961 actgaattta gtttcaaaaa aaaaaaaaaa a
//
