LOCUS       NM_025463                654 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 1810009A15 gene (1810009A15Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_025463
VERSION     NM_025463.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Funatsu,N., Inoue,T. and Nakamura,S.
  TITLE     Gene expression analysis of the late embryonic mouse cerebral
            cortex using DNA microarray: identification of several region- and
            layer-specific genes
  JOURNAL   Cereb Cortex 14 (9), 1031-1044 (2004)
   PUBMED   15142957
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY264380.1, BC058702.1 and AV210692.1.
            
            On Oct 30, 2013 this sequence version replaced NM_025463.2.
            
            Summary: This gene shares three exons in common with another gene,
            LBH domain containing 1 (GeneID:102308570), but the encoded protein
            uses a reading frame that is different from that of the LBH domain
            containing 1 gene. [provided by RefSeq, Nov 2017].
            
            Transcript Variant: This variant (1) represents the protein-coding
            transcript.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY264380.1, CF725381.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                BY264380.1         1-37
            38-636              BC058702.1         1-599
            637-654             AV210692.1         257-274
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 5.93 cM"
     gene            1..654
                     /gene="1810009A15Rik"
                     /note="RIKEN cDNA 1810009A15 gene"
                     /db_xref="GeneID:66276"
                     /db_xref="MGI:MGI:1913526"
     exon            1..82
                     /gene="1810009A15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..415
                     /gene="1810009A15Rik"
                     /codon_start=1
                     /product="uncharacterized protein C11orf98 homolog"
                     /protein_id="NP_079739.1"
                     /db_xref="CCDS:CCDS29555.1"
                     /db_xref="GeneID:66276"
                     /db_xref="MGI:MGI:1913526"
                     /translation="MAPPGGKINRPRTELKKKLFKRRRVLSRDRRRKRQVVGAVIDEG
                     LTTKHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKAAMEVEAPSKSTRTSQPQP
                     KQQKKIKAPQDVAMEDLEDKS"
     exon            83..207
                     /gene="1810009A15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            208..305
                     /gene="1810009A15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            306..654
                     /gene="1810009A15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      616..621
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1810009A15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      636
                     /gene="1810009A15Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggagcggaag tgcggctttt ggaatgagcc gcggagtgta gccatggcac ctccgggagg
       61 aaagatcaat cgtccccgga cggagctgaa gaagaagttg ttcaagcgcc gcagggtatt
      121 aagcagggat cggcgacgga aacgccaggt ggtcggggct gtgatagacg aagggctgac
      181 tacgaagcac cacctcaaga agcgggcgtc cagtgctcgt gccaacatca cgctgtctgg
      241 gaagaagcgc aggaaactct tgcagcagat ccgacttgcc cagaaagaaa aagcagccat
      301 ggaagtggaa gccccctcca agtcaaccag gactagtcag ccacagccca agcaacaaaa
      361 gaagataaaa gctccccagg acgtagctat ggaggatctt gaagataaga gctaaaatcc
      421 ctgcctcttc taccagaaga tggtcaacag cactgagaaa gatttggagg aactttggaa
      481 aaaatattag catatttcac tttcctagac acctcttcta cagcggaccc tgacctcccc
      541 tggaggtgta tattgggacc gaagaggaca cagagaaaga ctggagggcc acctctagca
      601 gtcaactcct tttgtaataa agctttagtg cgttcaccgt gtgggatgaa gtgc
//
