LOCUS       NM_028546               3008 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 1700066M21 gene (1700066M21Rik), mRNA;
            nuclear gene for mitochondrial product.
ACCESSION   NM_028546 XM_129727 XM_907648
VERSION     NM_028546.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ047538.1 and AC161493.6.
            
            On or before Aug 22, 2009 this sequence version replaced
            XM_907648.3, XM_129727.5.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR11927938.3250911.1,
                                           ERR3363660.1480418.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-441               CJ047538.1         3-443
            442-3008            AC161493.6         124140-126706
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 28.78 cM"
     gene            1..3008
                     /gene="1700066M21Rik"
                     /note="RIKEN cDNA 1700066M21 gene"
                     /db_xref="GeneID:73467"
                     /db_xref="MGI:MGI:1920717"
     exon            1..327
                     /gene="1700066M21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..1149
                     /gene="1700066M21Rik"
                     /note="UPF0565 protein C2orf69 homolog; mitochondrial
                     protein C2orf69 homolog"
                     /codon_start=1
                     /product="mitochondrial protein C2orf69 homolog precursor"
                     /protein_id="NP_082822.1"
                     /db_xref="CCDS:CCDS48264.1"
                     /db_xref="GeneID:73467"
                     /db_xref="MGI:MGI:1920717"
                     /translation="MLGSRRLRSPALVLLLLRPLLASGDSASRLQTRAMNPGGGERGS
                     PEDSHRLQRSTVPGSDPQRSNELLLLTSREGDSPEQRHHVLYFPGDVQNYHEIMTRHP
                     ENYQWENWSLENIATILARRFPNSYIWVIKCSRMHLHKFSCYDNFVKSNMFGAPEHTP
                     DFGAFKHLYMLLVNAFNLTQNGMLFKNRSVWNKDCKASNCESNPSTSNGGQKENERTC
                     EHVDEPSMSFPPLSLDGASFTLIGFSKGCVVLNQLLFELKEAKKDKNIDAFIKSIRTM
                     YWLDGGHSGGSNTWVTYPEVLEEFAQTGITVHTHVTPYQVHDPMRSWIGKEHKKFVQI
                     LRDLGMQVTSQIHFAKETPSIENHFRVHEVF"
     exon            328..3008
                     /gene="1700066M21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1178..1183
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1700066M21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1204
                     /gene="1700066M21Rik"
                     /note="major polyA site"
     regulatory      2985..2990
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1700066M21Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      3008
                     /gene="1700066M21Rik"
                     /note="major polyA site"
ORIGIN      
        1 gccgaggccc cgccctcgct gccgggtgag cggccctggc ggctcgagcc catgctgggg
       61 tcgcggcgtc tgcggtcccc cgcgctggtg ctgctgctgc tgcggccgct gctcgcttcc
      121 ggagactccg cgtcccgcct gcagacccga gccatgaacc cgggcggcgg tgagcggggc
      181 tccccggagg acagccaccg tctgcagcgc tccacggtgc cgggctccga cccgcagcgc
      241 agcaacgaac tgctcctgct gacatcccgg gaaggagatt ccccggagca gcggcaccac
      301 gtcctctact tccctgggga cgtgcagaat taccatgaga ttatgactcg tcatcctgag
      361 aattatcaat gggaaaattg gagtctagaa aacattgcta ccattttagc ccgccgtttt
      421 cccaatagtt atatttgggt aataaagtgt tcccgaatgc atttgcacaa attcagctgc
      481 tatgacaatt ttgtgaaaag caacatgttt ggtgcaccag aacatactcc ggactttgga
      541 gcctttaagc acttgtatat gttattagtt aatgctttta acctgactca gaacggtatg
      601 ctgttcaaga acaggagtgt ttggaataag gattgtaaag catctaactg tgagtctaat
      661 ccttctacta gtaatggtgg ccaaaaggaa aacgagagga cctgtgagca tgttgatgag
      721 ccttccatga gttttcctcc actgtcattg gatggtgcat cgtttacttt gattggattc
      781 agtaaaggct gtgttgtttt gaatcagttg ctgtttgagt tgaaggaagc caagaaagac
      841 aagaacatag atgcattcat caaaagcata agaacaatgt actggctaga tggtgggcat
      901 tctggaggaa gcaatacgtg ggtcacatat ccagaagtct tggaagaatt tgctcaaaca
      961 ggaattactg ttcacactca tgtaacacct taccaagtac atgatccaat gagatcctgg
     1021 attggaaagg agcacaagaa atttgttcag atactcaggg atttgggtat gcaagtgacc
     1081 agccaaattc attttgcgaa ggaaactcct tccatagaga atcatttcag ggttcacgaa
     1141 gtattctgag actattaatg tgcttgctta atgggagaat aaaattttga atgttataaa
     1201 tgcagatgat gagatgcaag attaatgatg cttcatcagt ttgtgggcta agaagatgca
     1261 cattccaaaa atatgagtgt caaatacagt aggattgttt tgcttgttaa gtgtgatcag
     1321 tttcaaattc tgatcaggtt agaattagct tgaaatctaa aagggttgtt tgtgctaatt
     1381 ctatgaccat taaaatgaag gcaaccatgt tagtttttta aaaggtaaca aaattggtgt
     1441 tggaaataat tgactttgct gagacctatt ttaatctaac tttggtgata atggcattca
     1501 gctgttgact agagacactg cacttctctc tgtccaacac actctgggga caactacacc
     1561 ctgcatccag actcccgggg ttgctgaacc cctagactca ttctcagtgg tccaccaagt
     1621 gttttgtttt gttttttaaa gtcaaaatat atttatcccc ctgtattcaa gattatagaa
     1681 tagtatagtt ggtttttaaa acattacact gagcactgta agttaattct taattgtcag
     1741 tttttaatta tttgttagtg tgctctcaaa acgagacaga tttcacagac ctaaatcagc
     1801 atttcttcag aagcatggtt ttgtctgcca agagaaaata gctttctttg gccaaatgta
     1861 aaattaaatt gatgagataa gaaaggttac aaaggaaggt ttggagacac aaataattta
     1921 aattttggcc cagaaactga atttgcttaa cactgctaca taatttgggc acatttttct
     1981 ttactagcaa aatgcatttt gagaaaccta gatctaacga atttcaaaca acattggaac
     2041 atagctgtgt agttttaaat agtggtcagg cactttttta tttataaata atgctgtgca
     2101 ggtcatgaaa taactaacag ggaactaaac cctgctgctt tgggcaagga actgtactaa
     2161 agaatggcac ctcccaggcc caacaagcta gtctatttat caaacaatat gaaagtgtta
     2221 agtctggttt cttccaaagt tacatcttaa tcaacctata agtatattcc aaatactcac
     2281 tcatggtaaa ggattccttc acacgtgttg ttttaaaatg agcatgattc tatcaactta
     2341 cagttgagta tctgtacatt ttcccaagta gttttatatt gtcccacttt ctttgaatat
     2401 ccattctttt gagattcatt tatttgagat caacacttcc cattgtaaaa acaacttacc
     2461 tggtttctaa cttactatgt acttccttaa cgttaagcac tgtgattgga tggctatctt
     2521 taatttgttt aataatcctc aaatgtgtca tttaatgtaa aactgcacta ctgaatggtc
     2581 atacagaagg gcaaggcttt agttttcaca ggattaactg aagtagacag agaagggttt
     2641 tcctttaaga actcattgag ttcttcacct ctccctctga ctgttcaatt gttacatgtt
     2701 aaagtggatg ttgatcagat ggacactaaa ccatcatcac ctctgcagac agtgttaagt
     2761 accacagatg ctaaggagtg gaaatgatcg agttgaccct cacacaggta tttctgttta
     2821 gtacttcaga gtggtccttt ctttcatctg tttaaaattg tatatgctaa attttttatg
     2881 gtaaacatgc attctacttg atcgtgcctt tgtaaagagt cactgagaga agtggtccta
     2941 caaatgtgag cattgttacc actacagcat gaatgtataa ttatattaaa gataataatc
     3001 cacagaaa
//
