LOCUS       NM_027103               3004 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus RIKEN cDNA 1700030J22 gene (1700030J22Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_027103 XM_134467
VERSION     NM_027103.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3004)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3004)
  AUTHORS   Hong,S., Choi,I., Woo,J.M., Oh,J., Kim,T., Choi,E., Kim,T.W.,
            Jung,Y.K., Kim,D.H., Sun,C.H., Yi,G.S., Eddy,E.M. and Cho,C.
  TITLE     Identification and integrative analysis of 28 novel genes
            specifically expressed and developmentally regulated in murine
            spermatogenic cells
  JOURNAL   J Biol Chem 280 (9), 7685-7693 (2005)
   PUBMED   15613475
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC100501.1, AK030075.1 and BE979287.1.
            
            On Oct 24, 2017 this sequence version replaced NM_027103.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK030075.1, BC137750.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849379, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-16                BC100501.1         1-16
            17-2987             AK030075.1         2-2972
            2988-3004           BE979287.1         1-17                c
FEATURES             Location/Qualifiers
     source          1..3004
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 63.41 cM"
     gene            1..3004
                     /gene="1700030J22Rik"
                     /note="RIKEN cDNA 1700030J22 gene"
                     /db_xref="GeneID:69528"
                     /db_xref="MGI:MGI:1916778"
     exon            1..181
                     /gene="1700030J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            182..429
                     /gene="1700030J22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             220..1449
                     /gene="1700030J22Rik"
                     /note="isoform a is encoded by transcript variant 1;
                     uncharacterized protein C16orf46 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C16orf46 homolog isoform
                     a"
                     /protein_id="NP_081379.1"
                     /db_xref="CCDS:CCDS22695.1"
                     /db_xref="GeneID:69528"
                     /db_xref="MGI:MGI:1916778"
                     /translation="MDVCEESETFLENTENQKIEATEETAPTLHCPDEKSERSHVCCL
                     LGVSDLTLEEDGRASECAISTGWEEAVHGWGRTSPTACIWSKKKVKRGRAREGTNGGN
                     DCLFCMSLSQGSLEPRSLLEVGKLEAGAEAEVSTQKSWSSEKNWSGLSQGPGTASREQ
                     SNKLCIPTDVHGEKKSLQLKEFIWCMEEWPMPETVSSKAGRNPSGSPEQGLSTPDSLA
                     AKALVVLPPLKSSPHNLDVLSKKSRNIFWQPEEKVLRVEKDDCMACADGLKGVDGKGE
                     KRHFELASHVKVTNVLPFPPTAAQTHLLSAESQRCCLHWSLLPQKSTVFPPNPSDIHY
                     LATLQVLGQQGKQSCRTRLKTKDTKPPRTTAKHIITEAKQQNRPHVLESKVFPKPLLP
                     SLTVSRVVIPVSTHRVL"
     exon            430..2992
                     /gene="1700030J22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1458..1463
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1700030J22Rik"
                     /note="hexamer: AATATA"
     polyA_site      1478
                     /gene="1700030J22Rik"
                     /note="major polyA site"
     polyA_site      2620
                     /gene="1700030J22Rik"
     regulatory      2960..2965
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1700030J22Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2992
                     /gene="1700030J22Rik"
ORIGIN      
        1 gacgcggccg taacctaggg caacagcccg gctcttgggg gccgcgactt gccgctccgg
       61 accttcctta cctcgcggcc ccgtaggagc gtctgagtgg ctgtggccac gtcctcaccc
      121 cggggaacac tccctagaca cttcacgggc ggcagagccg cggaaggaag caatcttcag
      181 ggaagaagat gttaaaaacc ataagcaatc accctagtaa tggatgtctg tgaggaaagc
      241 gagacttttt tagaaaatac agaaaatcag aaaattgaag ctacggaaga gacggcacca
      301 actttacatt gtccggacga gaaaagtgaa aggagtcatg tctgctgcct tcttggtgtc
      361 agcgacctca cactggaaga ggatgggagg gccagcgagt gtgccatcag caccgggtgg
      421 gaggaagctg tccatggctg gggaaggacc tcaccaactg cctgcatctg gtcaaagaag
      481 aaagtgaaaa gggggagggc cagagaaggc accaatggtg gcaacgactg cttgttctgt
      541 atgagtcttt cccaagggag tctggagccc cggtccctct tggaggttgg gaaactggag
      601 gcgggtgctg aggccgaggt gagcacccag aagagctgga gctctgagaa gaactggagc
      661 ggcctctccc agggccccgg cactgcttcc agagagcagt ctaacaaact ctgcattccc
      721 accgacgtgc atggagaaaa aaaaagcctg caactcaagg agtttatctg gtgcatggag
      781 gagtggccta tgcccgagac agttagcagc aaggccggca ggaaccccag cggaagcccc
      841 gagcaagggc tctccacccc tgactccctt gcagccaagg ctcttgtggt tcttcccccg
      901 ctgaaaagct ctccccacaa cttggacgtc ctgagtaaga aaagcaggaa tattttctgg
      961 cagccggaag aaaaggtgct gagggtggaa aaagacgatt gtatggcttg tgcagatgga
     1021 ctgaaaggag tagacgggaa aggtgaaaag agacactttg agctggccag ccacgtgaag
     1081 gtcaccaacg tactgccttt cccacccact gcggcccaga cccacctgct gtcagccgag
     1141 tcccaaaggt gctgcctgca ctggtccctc ctgccccaga aaagcactgt gttcccacct
     1201 aaccccagcg acatccacta ccttgccacc ctgcaggttt tggggcaaca gggaaagcaa
     1261 agctgcagaa ctaggctcaa aaccaaggac acaaaacctc ccaggaccac tgccaagcat
     1321 attatcacag aggccaagca gcaaaacagg ccccacgtgc tagaaagcaa agtcttccct
     1381 aaacctctct tgccatccct cacagtgagc agagttgtca tccccgtctc cacccacaga
     1441 gtactctgat ttgccacaat ataattccct gggactgagt gctgcctgaa actcatttgt
     1501 cccttcctgt cttaccttct ccttctgttt ccactcctca atcaaacctc ccctcccctc
     1561 cccatcttct ccactcctca ccccatcctt tatcctcccc cccctttttt agtgggtttg
     1621 gattcattct caaaaacagt atattgaggt aggcaggtgt ggtgacacac ctgtatttct
     1681 agcatttggg agactggagc aggaggatac caaattcaag gccagcctgg actatacaag
     1741 acactgtatg catgttacct gcttctgctg ctaagccatt tataaactct aaggtgggtc
     1801 agcctgggtc tgccttcttg gacagtggct cccatggagg gaggcggagc atcggaaagg
     1861 cacatggctg ctctcacccc agccccagag cctccctaca gggcttctgc tcccagcaga
     1921 gccccagctg agtgcatgct cagcttaggg aggcaccagc ttgtatttga atcaggcagc
     1981 tgttgtcttt tctttccctc aacaatgatg taagacactt gaggagtgga aagtcccagc
     2041 tctatcctag tggatacacc agtgtccaag gtgacatatc tttgtcttgc atccagagac
     2101 attgtccagt acctcccctg cctagggtgt cacatcttca tattgcagcc tcaagcatct
     2161 ctgtgaagac tagaaggctt attagtcaca gagtaataaa agcctgaaga ggaggttagg
     2221 aattggttgg tcgggagaac ccctcactga ttgctctgac ctgacctccc tcccttcatc
     2281 agccttcact tgcctctggg aagcctgggc tgtggacaca gaggaaggaa atgctgttgt
     2341 tactttatcc ctgccttccc ccgccctcag cttgtttcca cccgtgtgta gctccggaca
     2401 ttaccagtgc tggtgatagg tggacagatg cttcaaccat tttgtggtac tcagtaatca
     2461 ttaaattgct ttgtaatagc ttagtttgaa ttgcttagag taggctgtat ttgaactcag
     2521 atttccccat ctccttggtg atgacagcat atgactgtat tctctcttgt tttaagttta
     2581 cgattagcat tgctctctaa gatctcatct gttagccaga ggctttttgg tttgttttat
     2641 tttcattgtt tctggtgtct tggtttcctc taactcatac tggcctggag gtaactttga
     2701 actgatcctc ctgcctcagc cttccaaggg cttagattat aggcacgtgc caatgtctag
     2761 ccttctgaaa aacaaaaact aaactgctag ccaggaatgg ttgtataagc ctgcagaaaa
     2821 cacacagaaa accaaaacaa agccagagta cgaaggtaaa ggagcgaaag gtcacagcac
     2881 agggtaagaa gagaatgcgc tggctggggc agctcgagaa gagtttgtta gagtcctttt
     2941 gtccactctt cctcttccaa ataaaccacc tggattctat cccaaagaga aaaaaaaaaa
     3001 aaaa
//
