LOCUS       NM_001080777            1140 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RIKEN cDNA 1700029F12 gene (1700029F12Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_001080777 XM_986641
VERSION     NM_001080777.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1140)
  AUTHORS   Zambrowicz,B.P., Abuin,A., Ramirez-Solis,R., Richter,L.J.,
            Piggott,J., BeltrandelRio,H., Buxton,E.C., Edwards,J., Finch,R.A.,
            Friddle,C.J., Gupta,A., Hansen,G., Hu,Y., Huang,W., Jaing,C.,
            Key,B.W. Jr., Kipp,P., Kohlhauff,B., Ma,Z.Q., Markesich,D.,
            Payne,R., Potter,D.G., Qian,N., Shaw,J., Schrick,J., Shi,Z.Z.,
            Sparks,M.J., Van Sligtenhorst,I., Vogel,P., Walke,W., Xu,N.,
            Zhu,Q., Person,C. and Sands,A.T.
  TITLE     Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap
            screen to identify potential targets for therapeutic intervention
  JOURNAL   Proc Natl Acad Sci U S A 100 (24), 14109-14114 (2003)
   PUBMED   14610273
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154558.2, AK006036.1, CF106098.1, AK006488.1 and BY461519.1.
            
            On Sep 26, 2013 this sequence version replaced NM_001080777.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049576.1, BU939207.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-13                AC154558.2         169598-169610       c
            14-403              AK006036.1         2-391
            404-770             CF106098.1         214-580
            771-882             AK006488.1         727-838
            883-883             BY461519.1         98-98
            884-1134            AK006488.1         840-1090
            1135-1140           AC154558.2         157112-157117       c
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 50.66 cM"
     gene            1..1140
                     /gene="1700029F12Rik"
                     /note="RIKEN cDNA 1700029F12 gene"
                     /db_xref="GeneID:66479"
                     /db_xref="MGI:MGI:1913729"
     exon            1..181
                     /gene="1700029F12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..553
                     /gene="1700029F12Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="uncharacterized protein LOC66479 isoform 1"
                     /protein_id="NP_001074246.1"
                     /db_xref="GeneID:66479"
                     /db_xref="MGI:MGI:1913729"
                     /translation="MSSRQESDIGHDWDVSSDRNLTSGHDKEDSCGAQAAPSVTVKPP
                     LTRRTNVTWTANTACSHCYTAWTPSADTCHHSPRGLSVLLQAMAAAATTAMRLTDFYH
                     LLLQDYQPLSTEDQLSTEEPDANVYQVDPDGESQLHPKTDDAPRQQEAA"
     exon            182..403
                     /gene="1700029F12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            404..1140
                     /gene="1700029F12Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      851..856
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1700029F12Rik"
                     /note="hexamer: AATAAA"
     polyA_site      872
                     /gene="1700029F12Rik"
                     /note="major polyA site"
     regulatory      1116..1121
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1700029F12Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1140
                     /gene="1700029F12Rik"
                     /note="major polyA site"
ORIGIN      
        1 acagcacagc cttgtttgtt gatttaaaag gagggagtta tggagagcct tttggggtgc
       61 cacttggcag gaatctgaca ttggccatga caaggaaatg agctccaggc aggaatctga
      121 cattggccat gactgggatg taagctcaga caggaatctg acatcagggc atgataagga
      181 agacagctgt ggagctcaag cggcacccag tgtgacagtg aagccaccac tgacccggag
      241 aaccaatgtc acatggacgg ccaacactgc ctgtagccac tgctatactg cgtggactcc
      301 atccgctgac acctgccatc attcaccacg tggattgtca gtgctgctgc aggccatggc
      361 tgctgcggcc acgactgcta tgagactcac agacttctac cacctcctgt tgcaggatta
      421 ccagccactg tccacagaag accagctgtc cacagaggaa cctgatgcta atgtttacca
      481 agtggatcct gatggtgaaa gtcagctaca ccccaaaact gacgacgccc caagacagca
      541 ggaggcagct taagagacag gatgccctca ttctcttttc accatcagct tccccctccc
      601 tttcccccca cttctcttta taataacaag aagggagtta tgttggtatc aggacctcca
      661 aaacccgtga catcacatgg gtgggacctg cagtcctgtt gccaaggtaa caatcaccat
      721 attccagaat ctacttggct tacctcccac ctttacctgt gatatgtcat cacccatata
      781 taacccctcc catctctctc tttctcttcc ccccttctct ttctgccacc acgttgcccc
      841 tctctctcct aataaacctc tgacaggtgg aactgctttg gcctggtgtg ctatatttag
      901 acacaagccg ctgttctaac acatcaacaa tgggtcagca acaagtttcc agccccacgc
      961 cccagtaatg gttctggaat gtccctagag atagaggaag ataaaggtca cccgccctgg
     1021 aattcccttc atgtgctcta aatctggcct gcaagctcac ttggttgtct ctctatcttg
     1081 gtaatggggg accccagcat gctggacttc tacagaataa aacatacttt atctatttga
//
