LOCUS       NM_001378508            2576 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus RIKEN cDNA 1700024J04 gene (1700024J04Rik), mRNA.
ACCESSION   NM_001378508 XM_011249336
VERSION     NM_001378508.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2576)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 2576)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 2576)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   4  (bases 1 to 2576)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5  (bases 1 to 2576)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   6  (bases 1 to 2576)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   7  (bases 1 to 2576)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL646088.23.
            
            On Feb 20, 2020 this sequence version replaced XM_011249336.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.304517.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2406              AL646088.23        137432-139837       c
            2407-2576           AL646088.23        136145-136314       c
FEATURES             Location/Qualifiers
     source          1..2576
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 29.66 cM"
     gene            1..2576
                     /gene="1700024J04Rik"
                     /note="RIKEN cDNA 1700024J04 gene"
                     /db_xref="GeneID:105244158"
                     /db_xref="MGI:MGI:1919098"
     exon            1..2406
                     /gene="1700024J04Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..2429
                     /gene="1700024J04Rik"
                     /note="fibroin heavy chain-like"
                     /codon_start=1
                     /product="uncharacterized protein LOC105244158"
                     /protein_id="NP_001365437.1"
                     /db_xref="GeneID:105244158"
                     /db_xref="MGI:MGI:1919098"
                     /translation="MGGYLSRARPPPRPPPRPPPHPLPRPPPCPLPRPPPCPLLCPPP
                     RPQPRPPPRPPPPRPPPLTVSTRNLQKRPSPPAHRVSRSLRANSTNGSLNSADSRPFE
                     DDAALAHPQHPERVVVVHTQQYPVEEFSSTFLGSQHKSVLSRSRMSRSSVILNVFSNM
                     ARVTLRFVLGQLVPIIWSFLTGQFVSQSRKETQISALQESSQVQIKEKNDVTTVGEGG
                     EGFANQEEGSPVTETPNDQGKDSDLSVSASSAFTHLFINGVLSSFIPKPGPLGKLILF
                     KNSAKSWIKENQIAFKSSYKRNAIASSYSSSLAQWPPERICVDATGRAAPGAPSGAQG
                     VFKDSAAGATPGAVSGAAPGAATGDAARAAPGDASGAAMGGMGCATTGAAPGAASSIA
                     AGVAPGAAAPDTRGAVPGAAPGTAAGVAPAAASGAAARAATCDASGAATGGDAPGATS
                     SNPAGVPGAAAHDTRGAVPRAAPGTAADAATGDTSGAATEGAAPGAASSNAAGVAPGA
                     AARDTRGAVPDAAASGIAAGITQGAAFGVAALAPPGAAPGAAAAVTLVAAASAAPGAV
                     TSGAAAWADPGDASGPAAGTDAHAPRAVLRGTAAHITRGSLRTAAACAIGGALKETTA
                     HATQDPLRATIAHATRGASRGAAACAIGRVLSGAAAPATQGASRGAAAPATEDALKGV
                     GACAIRDAAKGAPAYAVPQSGWALSQLQVLPKKRKKKSYKLRSSGSPERKKKRPSEAE
                     HKWVSYSVTNAPQVQQGYPWNGFPKPDIPRPLRRAKAWGH"
     exon            2407..2576
                     /gene="1700024J04Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actttgctgt gtgggttctt caaggctagg gaagcgtttc tgagccattg actatttgaa
       61 gtctccagtt gttcagagct gtccggatgg gtggatacct gagccgggct cgccctccgc
      121 ctcgccctcc gcctcgccct ccgcctcacc ctctgcctcg ccctcctcct tgccctctgc
      181 ctcgccctcc tccttgccct ctgctttgcc ctccgcctcg ccctcagcct cgccctccgc
      241 ctcgccctcc tccgcctcgc cctccacccc tgaccgtgtc cactaggaac ctgcagaaga
      301 ggccctcacc accggcccac cgtgtttccc ggtctctccg ggctaattca acaaatggga
      361 gtctgaactc ggctgatagt cggccttttg aagatgatgc agctttagcc catcctcagc
      421 accctgagcg cgttgtggtc gttcacacgc agcaatatcc tgtggaggag ttttcctcta
      481 catttttagg tagccagcac aagtcagtgc tgtctagatc caggatgtcc cgaagctcgg
      541 tgatcctgaa tgtgttttct aatatggcca gagtcacact ccgttttgtt ctgggacagc
      601 tggtcccgat tatatggtct tttcttactg gccaatttgt gagtcaatct aggaaggaga
      661 cacagattag tgctctccag gagagcagtc aagttcaaat caaggaaaag aacgatgtca
      721 ccaccgtggg agaaggtgga gaaggatttg ccaatcagga ggaaggctcc ccggtcacag
      781 agacacctaa tgatcaggga aaggactctg atctcagtgt gagtgcctcg tcggctttta
      841 cacatttgtt tataaatggt gtactctctt cgtttatacc caagccaggt cctctgggta
      901 aacttatcct tttcaagaac tcagcaaaga gctggattaa ggaaaaccag attgccttca
      961 agagctcata caaacgaaat gccatcgcca gctcttacag ttcctctcta gcacagtggc
     1021 caccagagag aatttgtgtg gatgcaaccg gaagggctgc acctggtgct ccttcaggag
     1081 cccaaggtgt tttcaaagac tctgctgcag gtgctacacc aggtgctgtc tcaggtgctg
     1141 ctccaggtgc tgccacaggt gatgctgcac gtgctgcccc aggtgatgct tcaggggctg
     1201 ccatgggggg tatggggtgt gctaccacag gtgctgcccc aggagctgct tctagtattg
     1261 ctgcaggtgt tgccccaggt gctgctgcac ctgataccag aggtgctgtc ccaggagctg
     1321 ctccaggcac tgctgcaggt gttgctccag ccgctgcttc tggtgctgct gcacgtgctg
     1381 ccacatgtga cgcttcaggg gctgccacag ggggtgatgc cccaggagct acttctagta
     1441 atcctgcagg tgtcccaggt gctgctgcgc atgatacccg aggtgctgtc ccacgtgctg
     1501 ctccaggcac tgctgcagat gctgccacag gtgatacttc aggggctgcc acagagggtg
     1561 ctgccccagg agctgcttct agtaatgctg caggtgttgc tccaggtgct gctgcacgtg
     1621 atacccgagg tgctgttccc gatgctgctg cttcaggcat tgctgcaggc attactcaag
     1681 gtgccgcttt tggtgttgct gcacttgccc ccccaggtgc tgccccaggc gctgctgcag
     1741 ctgttacatt agttgctgct gcaagtgcag ctccaggtgc tgttacctca ggggctgctg
     1801 cgtgggctga cccaggtgat gcttcaggac ctgctgcagg taccgatgca catgctcctc
     1861 gagctgtttt aagaggcact gcagcacata ttacccgagg ttctttgaga actgctgctg
     1921 catgtgctat cggaggtgct ttgaaagaaa cgactgcaca tgccacccaa gatcctctga
     1981 gagccactat tgcacatgct acccgaggtg cttcaagagg tgctgctgca tgtgccatcg
     2041 gaagggtttt aagtggtgct gcagcacctg ctacccaagg tgcttccagg ggtgctgctg
     2101 cacctgctac ggaagatgct ctgaaaggtg ttggtgcatg tgctattcga gatgctgcca
     2161 aaggtgctcc tgcatatgcc gtgccacaat caggttgggc tttatcccag ttgcaggtgc
     2221 ttcccaagaa acgcaagaaa aaaagctata aacttagatc ttcaggtagt ccggaaagaa
     2281 agaaaaagag acccagtgaa gcagagcaca aatgggtgtc atacagtgtc acaaatgctc
     2341 ctcaagttca gcaaggatac ccatggaatg gcttccccaa acctgatatt ccaaggcctc
     2401 tgagacgtgc caaggcctgg ggtcactaaa tgacctgtgc atagccacat gtcactgagc
     2461 acttaacact gatcttcaat tctgagcatc cagtttttta tactctataa atttagtata
     2521 atatcacatt ctatgttagc gtcattttga cacttaaata aaattgttat ccagta
//
