LOCUS       NM_144953               3637 bp    mRNA    linear   ROD 01-MAY-2024
DEFINITION  Mus musculus RIKEN cDNA 1700019D03 gene (1700019D03Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_144953 NM_026477
VERSION     NM_144953.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3637)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3637)
  AUTHORS   Shalom-Barak,T., Zhang,X., Chu,T., Timothy Schaiff,W., Reddy,J.K.,
            Xu,J., Sadovsky,Y. and Barak,Y.
  TITLE     Placental PPARgamma regulates spatiotemporally diverse genes and a
            unique metabolic network
  JOURNAL   Dev Biol 372 (1), 143-155 (2012)
   PUBMED   22967998
REFERENCE   3  (bases 1 to 3637)
  AUTHORS   Thiagarajan,R.D., Georgas,K.M., Rumballe,B.A., Lesieur,E.,
            Chiu,H.S., Taylor,D., Tang,D.T., Grimmond,S.M. and Little,M.H.
  TITLE     Identification of anchor genes during kidney development defines
            ontological relationships, molecular subcompartments and regulatory
            pathways
  JOURNAL   PLoS One 6 (2), e17286 (2011)
   PUBMED   21386911
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3637)
  AUTHORS   Lin,Q., Donahue,S.L., Moore-Jarrett,T., Cao,S., Osipovich,A.B. and
            Ruley,H.E.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC129337.4.
            
            On Feb 2, 2019 this sequence version replaced NM_144953.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. All eight transcripts encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY710234.1, AK010796.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-226               AC129337.4         144193-144418
            227-3637            AC129337.4         171299-174709
FEATURES             Location/Qualifiers
     source          1..3637
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 26.99 cM"
     gene            1..3637
                     /gene="1700019D03Rik"
                     /gene_synonym="2410136C24Rik; smAKAP"
                     /note="RIKEN cDNA 1700019D03 gene"
                     /db_xref="GeneID:67080"
                     /db_xref="MGI:MGI:1914330"
     exon            1..226
                     /gene="1700019D03Rik"
                     /gene_synonym="2410136C24Rik; smAKAP"
                     /inference="alignment:Splign:2.1.0"
     exon            227..3637
                     /gene="1700019D03Rik"
                     /gene_synonym="2410136C24Rik; smAKAP"
                     /inference="alignment:Splign:2.1.0"
     CDS             394..714
                     /gene="1700019D03Rik"
                     /gene_synonym="2410136C24Rik; smAKAP"
                     /note="UPF0733 protein C2orf88 homolog; small membrane
                     AKAP"
                     /codon_start=1
                     /product="small membrane A-kinase anchor protein"
                     /protein_id="NP_659202.1"
                     /db_xref="CCDS:CCDS14949.1"
                     /db_xref="GeneID:67080"
                     /db_xref="MGI:MGI:1914330"
                     /translation="MGCMKSKETFPFPTTLDIDKLHESEEAFIPDDSSQYRTPSPGEQ
                     QQVQEVKKLPEPGAVIGALILEFADRLASEIVEDALQQWACENIQYYNIPYIESEGSD
                     TTIN"
     regulatory      755..760
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1700019D03Rik"
                     /gene_synonym="2410136C24Rik; smAKAP"
                     /note="hexamer: AATACA"
     polyA_site      775
                     /gene="1700019D03Rik"
                     /gene_synonym="2410136C24Rik; smAKAP"
                     /note="major polyA site"
     regulatory      814..819
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1700019D03Rik"
                     /gene_synonym="2410136C24Rik; smAKAP"
                     /note="hexamer: AATATA"
     polyA_site      835
                     /gene="1700019D03Rik"
                     /gene_synonym="2410136C24Rik; smAKAP"
ORIGIN      
        1 gaaggacgtc cgccctactc caggggagac gttgtctctg ctgcccggcc atgccgcacc
       61 ttttcaggct tcggctccct tcctgaggcc ccgccctggg gggcagcacc caccctggga
      121 gcccgggctg cggccagggg catgagaaca gccaagcgcc cgcgcctcct cggccgaggc
      181 cgcgcagact tgcgatggcg gtgcagctgg cccgctgcag tgtagggtaa acacaagacg
      241 tgaagagtag tgaaagggac tagtgcttgc caaaggggcc tgagagggaa gcctggtcag
      301 caccgtgtgg acagccctgc actgttttcc aaagatgctc ttgaagtagt cctcattaac
      361 acagcttgcc ttcacctgcc aaagctcttc atcatgggct gcatgaagtc aaaggaaacg
      421 ttcccatttc ctaccacatt ggacattgac aagctgcatg agagtgagga ggcctttatt
      481 ccagatgaca gcagtcaata taggacacct tctccaggtg aacaacagca agtccaggaa
      541 gtaaagaaac tcccagagcc cggtgctgtg atcggtgccc tgatccttga attcgcagac
      601 cgtctggcca gtgaaattgt ggaggatgcc ttgcagcagt gggcatgtga aaacatccag
      661 tactacaaca tcccatacat cgagagtgag ggctcagaca ccaccattaa ttgatgatac
      721 tcaactgtgc tctggatgta gtcggtgcta gttaaataca taagttttca aattcccatg
      781 tctatgatat taatgtaagg atgcttatga ggaaatataa ttttaagcaa ttctactatt
      841 ttatcaccaa tgtatatctg cttgactcaa gttttggtca cagaaggtct ggaaagaggt
      901 cttgtgccac ccagccatta gctgtctgtc ataccatgct cttcctgggg caggaatgac
      961 atcgccaaag aaaatattaa ataaaaagtg cccaagttcc aaatggttat tttaaagggt
     1021 tgactttaaa atgactattt tgttgattta tgccaaaaaa aaaaaaaaaa aaacaacata
     1081 aaacaaaaca aaaggcccag aacatgaaag ggaatttcct tagaatgtaa aaaaattgag
     1141 gagtagaact ccagccatag tgatccatag catgtctgtt gtcaaaacct actgtgtcag
     1201 ggattgccca cttcctgaca cctataacct accattggag aggtaaacca ccagtggaga
     1261 gggctgcctt gaatgtcgtt ctcagtagga agtctatttt tgtagatgta aagggtagca
     1321 accaccctca gcctcagggt catgccacag ctgtttctgg atgatttaaa ctttgcatgt
     1381 tacagccatc tttacagaat ctttatagaa gtcatgatag tttatcacat tgaaataaga
     1441 atctctttgg taccttttat tcagtaaatc ttaacaatga cagaaattta gtctgcaagg
     1501 tgaaactttg agcctggttt tcatggctaa caatgtataa ggcctcactg cagtgctggt
     1561 acaggggtag atgtgtacat ggtatgagga cttgcaattc tcctcccaaa gggaccacct
     1621 gtgtgcgaat tagcagtcac tcatgccccc agaacactct tagccacata ctctactcct
     1681 gaatggagaa cttgtgtggg ttttagcagt catgaatgcc cacagaatac ttttagtcat
     1741 attgtagaag tgttataaat taggcattta aaaaactatc atatgcttta tttttttttt
     1801 ttttaaatct taactgttta aaactcaaca gtaacagaag accttgaaca aagtcaatag
     1861 aagaggactg actgagtgtc aagaattatc gccaagctgt gctaaacacc gagtaagagg
     1921 aaatggggcc catctatacc agtccttcaa ggacacgatt tatcagcatt cttgaaatcc
     1981 aaagccatta aagaaaggct tttgatatca ttgtgatcta aataggtact tgacttttac
     2041 tcaagaaatg ctgaatagag aaatgctgcc tctagtttta tagtaataca ttgaaacata
     2101 agtcaaactg tgtgaattct ccaagtttta ggagcagaga ggttgttaat attagtgaca
     2161 gccatcattc agatacccat tcattctgtt agtttcacac acagtgctcc attacactgg
     2221 tgattggaca gctcacagaa ctgcaagcaa ccactcctgc tcctatgcct tccatttagt
     2281 tcatggagca gtgtagtttc caatgtctat actgatgatt caggcaaaag cccctaggtc
     2341 atgatgtttc tcattcaatt ggtttctcat atgaagatgc ctgttgcaaa gtttcttgtt
     2401 atttgacaaa tataattaag tatataaaat aatatatatg ttggtcagaa cataaagaca
     2461 aaatctacac agagatattg gcaagtgggt acgggttgag catttcaact tcaggtttct
     2521 tctttgtctg agggttgagc ctgcccagtc cacatctacc cagatgtctg ctctctgttg
     2581 cccctatgtt tcacaactat agtttaagca actatgatca acagtttcat ctcatatata
     2641 tatatattaa aaatgttatc atactctaag agacctactt taaaatgtat aagaactgta
     2701 cacacacagt aagtagtgga taaactgtgt gataaaataa ttgaacaaac tttataccac
     2761 attggacagt atcaggatat agtatagttt ggccttgatg agaattagga acctttcatg
     2821 aggaatcagc cctttttaat ggctttatct tcaaacaact gagtctcgtt tgcggtcttt
     2881 cattaaggag tagaggagtg aggagggtcc cataaaacag atcactgaac aactcgttac
     2941 ctgctggaca gagacacgtg gaacatgtct aagggcacga gacctcccag tggcaactgc
     3001 agaagtagaa gtagaacatg tcctgttcct tacttagact ctcaaaatgc cagtgtgttt
     3061 caccgccctt ccctgctgtc tctttggtgt tgttgccttt tgattacaag ccttggatgc
     3121 tggtggaatc ttagttgcct tatcagttct ttacaatcta cctatggtta ttatcactta
     3181 aagcacaatt ttgaaggaga caaatatgat tatcttaagc ccaaaggaat ttgtatcaag
     3241 ctgtctcaaa cattaaaagt aaatgtacaa aaatcccatg atatgcagat cctagttaat
     3301 catcagcatt ggcatttggg accgagtaca cttctgaatt acattatttt ggaaaccagg
     3361 ggttagatat gataaataat gtaaaaaaaa aaaaagtaat gtaccataga gcgtctatgg
     3421 tacattaaac gacccaggta tttcttcctt ggagccataa acactagctc taaagaatta
     3481 gctaccactt tagtccccaa actcaagttt tgttggcaaa cttccttcac tgtaggagtt
     3541 aacattgaag aggtattttt ttcccagata tttttgtgaa aatggttttg ttgtttgttt
     3601 tgggtttttt gtaactataa taaaagtcta attgcaa
//
