LOCUS       NM_001200013            1224 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), mRNA.
ACCESSION   NM_001200013 XM_135430
VERSION     NM_001200013.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1224)
  AUTHORS   Zhuang XJ, Tang WH, Feng X, Liu CY, Zhu JL, Yan J, Liu DF, Liu P
            and Qiao J.
  TITLE     Trim27 interacts with Slx2, is associated with meiotic processes
            during spermatogenesis
  JOURNAL   Cell Cycle 15 (19), 2576-2584 (2016)
   PUBMED   27612028
  REMARK    GeneRIF: Trim27 connecting Slx2 may regulate meiotic processes in
            multiple ways by influencing XY body formation and germ cell
            proliferation during spermatogenesis.
REFERENCE   2  (bases 1 to 1224)
  AUTHORS   Li M, Huang R, Jiang X, Chen Y, Zhang Z, Zhang X, Liang P, Zhan S,
            Cao S, Songyang Z and Huang J.
  TITLE     CRISPR/Cas9 Promotes Functional Study of Testis Specific X-Linked
            Gene In Vivo
  JOURNAL   PLoS One 10 (11), e0143148 (2015)
   PUBMED   26599493
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1224)
  AUTHORS   Zhuang XJ, Shi YQ, Xu B, Chen L, Tang WH, Huang J, Lian Y, Liu P
            and Qiao J.
  TITLE     SLX2 interacting with BLOS2 is differentially expressed during
            mouse oocyte meiotic maturation
  JOURNAL   Cell Cycle 13 (14), 2231-2237 (2014)
   PUBMED   24870619
  REMARK    GeneRIF: SLX2 might be a novel gametogenesis-related protein that
            could play multiple roles in regulation of meiotic processes
            including synaptonemal complex assembly and chromosome segregation.
REFERENCE   4  (bases 1 to 1224)
  AUTHORS   Shi YQ, Zhuang XJ, Xu B, Hua J, Liao SY, Shi Q, Cooke HJ and Han C.
  TITLE     SYCP3-like X-linked 2 is expressed in meiotic germ cells and
            interacts with synaptonemal complex central element protein 2 and
            histone acetyltransferase TIP60
  JOURNAL   Gene 527 (1), 352-359 (2013)
   PUBMED   23810942
  REMARK    GeneRIF: SLX2 interacts with synaptonemal complex central element
            protein 2 (SYCE2), an important component of synaptonemal complex.
REFERENCE   5  (bases 1 to 1224)
  AUTHORS   Kogo H, Tsutsumi M, Ohye T, Inagaki H, Abe T and Kurahashi H.
  TITLE     HORMAD1-dependent checkpoint/surveillance mechanism eliminates
            asynaptic oocytes
  JOURNAL   Genes Cells 17 (6), 439-454 (2012)
   PUBMED   22530760
REFERENCE   6  (bases 1 to 1224)
  AUTHORS   Tsutsumi M, Kogo H, Kowa-Sugiyama H, Inagaki H, Ohye T and
            Kurahashi H.
  TITLE     Characterization of a novel mouse gene encoding an SYCP3-like
            protein that relocalizes from the XY body to the nucleolus during
            prophase of male meiosis I
  JOURNAL   Biol Reprod 85 (1), 165-171 (2011)
   PUBMED   21451147
  REMARK    GeneRIF: accumulates at the XY body of early pachytene to
            midpachytene spermatocytes
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL691513.13 and AK005953.1.
            
            On Jan 7, 2011 this sequence version replaced XM_135430.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK005953.1, SRR5189685.131795.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-18                AL691513.13        72462-72479         c
            19-1224             AK005953.1         2-1207
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 30.01 cM"
     gene            1..1224
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /note="RIKEN cDNA 1700013H16 gene"
                     /db_xref="GeneID:75514"
                     /db_xref="MGI:MGI:1922764"
     exon            1..70
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /inference="alignment:Splign:2.1.0"
     exon            71..417
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..959
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /note="SYCP3-like X-linked 2"
                     /codon_start=1
                     /product="synaptonemal complex protein 3-like"
                     /protein_id="NP_001186942.1"
                     /db_xref="CCDS:CCDS53071.1"
                     /db_xref="GeneID:75514"
                     /db_xref="MGI:MGI:1922764"
                     /translation="MFPRGRRDPEEFKSTPEDPEEPESTTRDPGGLESTPGDPEGFES
                     TPGDPEGFESTPGDPKGFESTPGDPEGFESTPGDPVGFESTPTEEEHLAVYSFDDDFQ
                     HPRVLQRSEELRSTSDSCRERSPVELFTDPGEKVEVMLGRIGVDINRALSAKRQRMET
                     TARQSFEGVEQKMKEVWNSHEDAMAQLNEESAQAFANLFEQWNEDFKKFREQHEKLVN
                     DFKQQEKIFQRTRFVQNQRIRTIKEIHEQFLQKLEDLESKNDDLLTRTQNELKDEIND
                     LQKKILRESEESTLF"
     exon            418..481
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /inference="alignment:Splign:2.1.0"
     exon            482..516
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /inference="alignment:Splign:2.1.0"
     exon            517..634
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /inference="alignment:Splign:2.1.0"
     exon            635..734
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /inference="alignment:Splign:2.1.0"
     exon            735..833
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /inference="alignment:Splign:2.1.0"
     exon            834..938
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /inference="alignment:Splign:2.1.0"
     exon            939..1224
                     /gene="1700013H16Rik"
                     /gene_synonym="Slx2; Xlr6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggaacgttg gtggggccag aggtcttggc ctctcctcga aggccgctga agccgaccag
       61 gggtgtgaag aaaacataca attatgtttc cccgtggaag aagggaccct gaagaattta
      121 aaagcacccc agaggaccct gaagaacctg aaagcaccac aagggaccct ggaggacttg
      181 aaagcacccc aggggaccct gaaggatttg aaagcacccc aggggatcct gaaggatttg
      241 aaagcacccc gggggaccct aaaggatttg aaagcacccc gggggaccct gaaggatttg
      301 aaagcacccc aggggaccct gtaggatttg aaagcacccc aacagaggaa gaacatttag
      361 cagtttattc ctttgatgat gactttcagc atcccagggt tttgcagagg agtgaagaac
      421 tgcgttcaac atctgattca tgtcgggaga gaagtcctgt agaactgttt acagatccag
      481 gggaaaaggt ggaggttatg cttggaagaa ttggagttga cattaaccgt gctcttagtg
      541 ctaagagaca aagaatggag acaactgcca gacagtcttt tgagggagtt gagcagaaaa
      601 tgaaagaagt ttggaactct catgaagatg caatggcaca gcttaatgaa gagtctgctc
      661 aggcatttgc aaatctgttt gagcaatgga atgaggattt taagaaattc cgagaacaac
      721 atgagaaact tgtgaatgat tttaagcaac aggagaagat ttttcaacga actagatttg
      781 ttcagaacca gagaattaga acaattaaag aaatacatga acaattctta cagaaattgg
      841 aagacctgga gagcaagaat gatgatctgc ttactagaac acaaaatgaa cttaaggatg
      901 aaattaatga tctgcagaaa aaaattttga gagaatctga ggagtctacg ctcttttgat
      961 gggaagaata tttgaagaag gaactttaac tgaagtgata cagttcaaat gccagcgagg
     1021 atccatgctt gaagacaagt attaggataa atgatgagat cattagtcat tagtttgtct
     1081 cccttgttct ttatttagaa taacatccag ttatgttagt atcaactatt cctgtatgtc
     1141 aaggatttgc ctcttttgtt ataatagagt gaatttttgt atgacactgt tgagttgtta
     1201 tcagtaaaaa tgattgaagt ttgg
//
