LOCUS       NM_029306                696 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RIKEN cDNA 1700012B09 gene (1700012B09Rik), mRNA.
ACCESSION   NM_029306
VERSION     NM_029306.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Stauber,M., Boldt,K., Wrede,C., Weidemann,M., Kellner,M.,
            Schuster-Gossler,K., Kuhnel,M.P., Hegermann,J., Ueffing,M. and
            Gossler,A.
  TITLE     1700012B09Rik, a FOXJ1 effector gene active in ciliated tissues of
            the mouse but not essential for motile ciliogenesis
  JOURNAL   Dev Biol 429 (1), 186-199 (2017)
   PUBMED   28666954
  REMARK    GeneRIF: 1700012B09RIK protein localises to basal bodies of cilia
            in cultured cells.
REFERENCE   3  (bases 1 to 696)
  AUTHORS   Stauber,M., Weidemann,M., Dittrich-Breiholz,O., Lobschat,K.,
            Alten,L., Mai,M., Beckers,A., Kracht,M. and Gossler,A.
  TITLE     Identification of FOXJ1 effectors during ciliogenesis in the foetal
            respiratory epithelium and embryonic left-right organiser of the
            mouse
  JOURNAL   Dev Biol 423 (2), 170-188 (2017)
   PUBMED   27914912
REFERENCE   4  (bases 1 to 696)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   5  (bases 1 to 696)
  AUTHORS   McClintock,T.S., Glasser,C.E., Bose,S.C. and Bergman,D.A.
  TITLE     Tissue expression patterns identify mouse cilia genes
  JOURNAL   Physiol Genomics 32 (2), 198-206 (2008)
   PUBMED   17971504
  REMARK    GeneRIF: 1700012B09Rik is most abundantly expressed in tissues rich
            in highly ciliated cells, such as olfactory sensory neurons, and is
            predicted to be important to cilia.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK005747.1, CF105954.1 and BE949439.1.
            
            On Sep 3, 2009 this sequence version replaced NM_029306.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY705910.1, AK005747.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-121               AK005747.1         2-122
            122-634             CF105954.1         71-583
            635-696             BE949439.1         1-62                c
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 4.31 cM"
     gene            1..696
                     /gene="1700012B09Rik"
                     /gene_synonym="1700007P19Rik"
                     /note="RIKEN cDNA 1700012B09 gene"
                     /db_xref="GeneID:69325"
                     /db_xref="MGI:MGI:1916575"
     exon            1..192
                     /gene="1700012B09Rik"
                     /gene_synonym="1700007P19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            193..297
                     /gene="1700012B09Rik"
                     /gene_synonym="1700007P19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            298..423
                     /gene="1700012B09Rik"
                     /gene_synonym="1700007P19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            424..688
                     /gene="1700012B09Rik"
                     /gene_synonym="1700007P19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      668..673
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1700012B09Rik"
                     /gene_synonym="1700007P19Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      688
                     /gene="1700012B09Rik"
                     /gene_synonym="1700007P19Rik"
                     /note="major polyA site"
ORIGIN      
        1 agacgccttg cgttccagag cagccggtgg cggagttgag aggccgtgga gaccccggtg
       61 gcatgaggcg gcaggaggcg ctggcaggga cagcctcaga ggcgggccgc gaaggggagc
      121 agcctaggcc ggcagggctg gggtgccgca cccgtgctga gcctggtggc ccccaagagt
      181 ctcgccaaca atggaaaaca tttctatact gtgaaccgca taagagaatc aaggaggttt
      241 tggaagaaga actttcaatc aagagagatg aatgccatgt gaaaagccca cctacagtgg
      301 ccctggatgg aatctggagc attagaagga atctccctgt gggaggcacc atatcaggac
      361 agcagagcag aaacagctca cttccacaag ccaagtacta ctcgaggcac ggaggactga
      421 gaagataaga tggacacatc tttccacaga gatggaactt cattcaccta aagtctaaag
      481 gcagaagaaa cccaggcttg tttctcaatt aagatacacg ggggagaaaa aaggttttac
      541 cctgtaatac taatatgtac gtcactccaa agaaatgaaa taccattgag aagatatgct
      601 aagaaaaata cacttgtgtt ttagttttca cagttgggat gtattaggct tctgttcagc
      661 ttattctatt aaatgtatca aacaaaaaaa aaaaaa
//
