LOCUS       NM_198000               1440 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RIKEN cDNA 1700001O22 gene (1700001O22Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_198000
VERSION     NM_198000.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1440)
  AUTHORS   Lu,Y., Oura,S., Matsumura,T., Oji,A., Sakurai,N., Fujihara,Y.,
            Shimada,K., Miyata,H., Tobita,T., Noda,T., Castaneda,J.M.,
            Kiyozumi,D., Zhang,Q., Larasati,T., Young,S.A.M., Kodani,M.,
            Huddleston,C.A., Robertson,M.J., Coarfa,C., Isotani,A.,
            Aitken,R.J., Okabe,M., Matzuk,M.M., Garcia,T.X. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched
            genes dispensable for male fertility in micedagger
  JOURNAL   Biol Reprod 101 (2), 501-511 (2019)
   PUBMED   31201419
REFERENCE   3  (bases 1 to 1440)
  AUTHORS   Gineste,C., De Winter,J.M., Kohl,C., Witt,C.C., Giannesini,B.,
            Brohm,K., Le Fur,Y., Gretz,N., Vilmen,C., Pecchi,E., Jubeau,M.,
            Cozzone,P.J., Stienen,G.J., Granzier,H., Labeit,S.,
            Ottenheijm,C.A., Bendahan,D. and Gondin,J.
  TITLE     In vivo and in vitro investigations of heterozygous nebulin
            knock-out mice disclose a mild skeletal muscle phenotype
  JOURNAL   Neuromuscul Disord 23 (4), 357-369 (2013)
   PUBMED   23375831
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL844532.18.
            
            On Aug 19, 2011 this sequence version replaced NM_198000.2.
            
            Transcript Variant: This variant (1) encodes a 375 aa protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC023044.1, ERR3363658.3460457.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-598               AL844532.18        32151-32748         c
            599-686             AL844532.18        31925-32012         c
            687-779             AL844532.18        31735-31827         c
            780-892             AL844532.18        28879-28991         c
            893-1058            AL844532.18        27412-27577         c
            1059-1197           AL844532.18        27156-27294         c
            1198-1440           AL844532.18        26574-26816         c
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 21.74 cM"
     gene            1..1440
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /note="RIKEN cDNA 1700001O22 gene"
                     /db_xref="GeneID:73598"
                     /db_xref="MGI:MGI:1923631"
     exon            1..598
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             181..1308
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /codon_start=1
                     /product="uncharacterized protein C9orf50 homolog"
                     /protein_id="NP_932117.2"
                     /db_xref="CCDS:CCDS15885.1"
                     /db_xref="GeneID:73598"
                     /db_xref="MGI:MGI:1923631"
                     /translation="MFRRQSMEGTPAYKPKGYPDGTTQRRPVKRLPMLLPMLEGRVGR
                     DVDGAWRRDRKSQRLPCGSPESPNARRDRGTARALLLPSLQPSSSAREAGTRGNRQPA
                     ARDNPDSLGTLLGKLLPNKFRHFLHHLSAESADPEADPPSAPHNPRSTSNHCLASRSS
                     SCLFLPDLWDKPLHWDNNFKEKTTLGLPRGELARAKKAHPPAGEGSRPRKRYCPFRVR
                     FADETLQDTALRYWERNRAVRQNIFPSEQTALPAVSVSERVLGSVGRWLDSLPRALYP
                     RVQDTVAGSSFWTCPRVSAQEPQLYLSEDSSVSSHLPFISRATIPRPRGGLRTFLDTP
                     NNVDQESFLPSLVLQSVLKQGRPKGYQLLLPSTTNRQQAHR"
     exon            599..686
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            687..779
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            780..892
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1058
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1197
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1198..1440
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1440
                     /gene="1700001O22Rik"
                     /gene_synonym="1700113K14Rik; 4930549G18Rik"
                     /note="major polyA site"
ORIGIN      
        1 gttcccgccc tcaccgcctt tgcgccggga cacagcaggc tagggtcctg ccggagtcgg
       61 cttctgctgc cccttcccgg cgctatggac tgcgggctgg aatacgacct tcctgcggcc
      121 ccgctcgccc ctgcgcgtcc cccgggcgcg aaggtgtcct gagccgagct ctgactcagg
      181 atgttccggc gccagtccat ggaggggacc ccggcctaca agcccaaggg atatcccgac
      241 gggaccaccc agcgccgccc tgttaagcgg ctgccgatgc tgctgccaat gctcgaaggc
      301 cgtgtggggc gagatgtaga cggcgcgtgg cggcgggacc gcaagtccca gcgcctgcct
      361 tgcgggtccc ccgagtcccc gaacgctcgg cgagaccgtg ggaccgcgcg cgcactgcta
      421 ctgccgtcgc tgcagccgag cagctcggcc cgggaggcgg gaactcgggg gaaccggcag
      481 cctgcagccc gcgacaaccc tgactccctg ggcacgctgc tggggaagct gctgcccaac
      541 aagttccgcc acttcctgca ccacctgagc gccgagagcg cagacccaga ggcggaccca
      601 ccctcagcgc cacataaccc taggagtaca tcaaatcact gcctagcttc tcggtcttcc
      661 agctgcttat tcctcccaga cctgtgggac aaaccattgc actgggacaa caattttaaa
      721 gagaagacta ccctggggct cccaagaggt gaacttgcca gagccaaaaa ggcccatccc
      781 cccgctggag aaggctcaag accccgaaaa cgctattgtc ccttccgggt acgattcgca
      841 gacgagaccc tgcaggacac agcactccgg tactgggaac gcaaccgtgc agtccggcag
      901 aatatctttc cgagtgagca gacggctttg ccagctgtat ctgtgtcaga acgggtgctc
      961 gggagtgttg ggagatggtt ggacagtctg cccagagccc tttatcccag ggtccaagac
     1021 actgtggccg gctcctcatt ctggacctgc ccccgcgtgt cagctcagga acctcagctc
     1081 tacctttctg aggactcctc cgtgagcagc cacctaccct tcatctccag ggccaccatc
     1141 ccaaggccac ggggaggcct cagaaccttc ctggacaccc ctaacaatgt ggatcaggaa
     1201 tcctttctgc ccagtttggt gctgcagtct gtcctgaagc aaggccgccc taagggctac
     1261 cagctgctcc tgccgtccac cacaaaccgg cagcaggctc acaggtgaat gcctgccaga
     1321 gctcccccca gctcaggagt gtacccatgc caggcaatga agagagtgct tcttcacccc
     1381 acaaataaac acacctccca ggtggctggg atggatcact aggtctccca gtaaaagcca
//
