LOCUS       NM_001418329            1925 bp    mRNA    linear   ROD 08-AUG-2023
DEFINITION  Mus musculus RIKEN cDNA 1700001J03 gene (1700001J03Rik), transcript
            variant 2, mRNA.
ACCESSION   NM_001418329 XM_030254791
VERSION     NM_001418329.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 1925)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   4  (bases 1 to 1925)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   5  (bases 1 to 1925)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   6  (bases 1 to 1925)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   7  (bases 1 to 1925)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   8  (bases 1 to 1925)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC113316.14.
            
            On Mar 18, 2023 this sequence version replaced XM_030254791.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660811.50411.1,
                                           SRR17784648.359482.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1088              AC113316.14        141957-143044
            1089-1309           AC113316.14        145227-145447
            1310-1512           AC113316.14        145631-145833
            1513-1560           AC113316.14        146372-146419
            1561-1757           AC113316.14        146943-147139
            1758-1925           AC113316.14        147973-148140
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 85.17 cM"
     gene            1..1925
                     /gene="1700001J03Rik"
                     /note="RIKEN cDNA 1700001J03 gene"
                     /db_xref="GeneID:69282"
                     /db_xref="MGI:MGI:1916532"
     exon            1..1088
                     /gene="1700001J03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1309
                     /gene="1700001J03Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             1178..1837
                     /gene="1700001J03Rik"
                     /codon_start=1
                     /product="uncharacterized protein LOC69282"
                     /protein_id="NP_001405258.1"
                     /db_xref="GeneID:69282"
                     /db_xref="MGI:MGI:1916532"
                     /translation="MFSCFQGSRGSSHKKAKSGFLVRFWRRLIRPLSHFRHASHSEPK
                     VCSQNEQEPDCMPRRPRFNYNSPEYVVQMIHYIPAAVQHNDHVCIRIFLAMYPSYAST
                     WKVLDLLMTTYASFRPDCVEDQQTKSDVFSFLFHWFKKFPKDFCESPDLDVVRQFIDY
                     VRRNVPSADEDTQARELLSVLEEQEAIALNTEEVVQSTYVLPMDCIFETNRLISEMGP
                     S"
     exon            1310..1512
                     /gene="1700001J03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1513..1560
                     /gene="1700001J03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1561..1757
                     /gene="1700001J03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1758..1925
                     /gene="1700001J03Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttttctgc tactttttgt ttcttttatt tgtttgatct taaagagtct ttctcttatg
       61 tagcttgact ctctcgcaac tcattatgta gaactcaaag gtatccaact gtctcagctt
      121 cccgagtatt ggaaaaaagg cactgaccac catacccagg ctttgtctgc ttcttacttc
      181 tgtctaacag gtccatggga aatgggtggc cacagtgtag gttgtccagc tgccaggacc
      241 caggctctga cactaacaac ccttataaag gcttggctgc ctgtatgccc tcaggtggat
      301 gtcaggggga ctgcagctga actttgagca gctggggtgt caggacacaa gcatatttga
      361 ctagtggcat cctcctttag agcagcccct acagtgtccc tgggatgcta acccaggctc
      421 cccttgctcc cctgggtaaa gaggaggacc cagacaagct ggagctgctg tcacagtccc
      481 acactgtgta aatgaacatg gtctctatgt caacacagtt tggaaagggg ctgacatcca
      541 gtgccacacc gaaatacaag ggacttggat gtccttgaac acgggacaga cttttcccta
      601 gcatttctag gtaaagctaa agctgtctgg aaatgagcat ctgaagaact cccattaatt
      661 acactctaca gcctctgtcc cagaaaagga ctctgtcagt tggtttggcc gaattggccc
      721 atgcttctgc aggaggtggg atggggcacc tttcacagat ggtggcccca tgcactgaag
      781 agaatcacat aactggaaaa ctaaactatc tgatgttttt tttttttttc acagcctatc
      841 aaggggaccc gcgataggaa tgaagcccct gcccctaatc ctgctctgtt gaaatcactg
      901 cagtagccac ccccactccc atctctatct gaaatgtcac tgagatgcca gcacacaggt
      961 ccaggaggtt cttcttgtgc tcaatggaca accaccaccc tctagtggcc acatgatgca
     1021 gcgtcatctt ctcgggaaga ggttcagggg cacccaacct gcttatgtca attaacctgt
     1081 tgttaaagat ggaactcaga atgctggtta ccaggtaacc agaggccagc agtagcctta
     1141 cccgacttac ttgtctggag gacctagagg gagcaagatg ttctcctgtt tccagggttc
     1201 cagaggctcc agccacaaaa aagccaagag cggtttcctt gttcgctttt ggagacgttt
     1261 gattcgccct ctgtcacact tcaggcatgc ttcccacagt gagcccaagg tctgttctca
     1321 aaatgaacag gagccagact gtatgcccag gcgcccccga ttcaactata acagcccaga
     1381 atacgtggta caaatgatcc actacatacc agctgctgtt cagcataatg accatgtctg
     1441 tatccgcatt tttcttgcca tgtacccatc gtacgctagc acttggaagg tgctggacct
     1501 gctgatgaca acgtatgcat ccttccggcc tgactgtgta gaagaccagc aaaccaagag
     1561 tgacgtattc agctttctgt tccactggtt taagaaattc cccaaggatt tttgtgagtc
     1621 cccagacctg gatgttgtaa ggcagttcat tgactacgtg aggcgcaatg tgccttctgc
     1681 agatgaagat acccaagcca gggagctgct ctccgtgctg gaggagcagg aggccatcgc
     1741 gctaaacact gaggaagtgg tacaatctac ttatgtttta cccatggact gcatctttga
     1801 gacaaacagg ttgatctcgg aaatgggacc ctcatagtcc accatggaag cagaaaagca
     1861 agcagctggt gtgacagagt gagcaaatac cagttgtggt gaacaatata aactatgtgc
     1921 ctaaa
//
