LOCUS       NM_026451               2509 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 1600012H06 gene (1600012H06Rik), transcript
            variant 2, mRNA.
ACCESSION   NM_026451
VERSION     NM_026451.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB610149.1, AK005427.1, AK083064.1 and AU254107.1.
            
            On Apr 4, 2007 this sequence version replaced NM_026451.1.
            
            Transcript Variant: This variant (2) has an alternate splice site
            in the 5' UTR, compared to variant 1. All variants encode the same
            protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK028052.1, SRR1660819.100310.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                BB610149.1         2-29
            29-1554             AK005427.1         6-1531
            1555-2444           AK083064.1         1743-2632
            2445-2471           AU254107.1         245-271
            2472-2509           AU254107.1         273-310
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 8.95 cM"
     gene            1..2509
                     /gene="1600012H06Rik"
                     /note="RIKEN cDNA 1600012H06 gene"
                     /db_xref="GeneID:67912"
                     /db_xref="MGI:MGI:1915162"
     exon            1..136
                     /gene="1600012H06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            137..2509
                     /gene="1600012H06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             183..740
                     /gene="1600012H06Rik"
                     /note="UPF0669 protein C6orf120 homolog"
                     /codon_start=1
                     /product="UPF0669 protein C6orf120 homolog precursor"
                     /protein_id="NP_080727.2"
                     /db_xref="CCDS:CCDS37444.1"
                     /db_xref="GeneID:67912"
                     /db_xref="MGI:MGI:1915162"
                     /translation="MATPWRRALLMILASQVVTLVKCLEDDDVPEEWLLLHVVQGQIG
                     AGNYSYLRLNHEGKIILRMQSLRGDADLYVSDSTPHPSFDDYELQSVTCGQDVVSIPA
                     HFQRPVGIGIYGHPSHHESDFEMRVYYDRTVDQYPFGEAAYFTDPTGASQQQAYAPEE
                     AAQEEESVLWTILISILKLVLEILF"
     regulatory      1481..1486
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1600012H06Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1500
                     /gene="1600012H06Rik"
                     /note="major polyA site"
     regulatory      1539..1544
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1600012H06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1561
                     /gene="1600012H06Rik"
                     /note="major polyA site"
     regulatory      2485..2490
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1600012H06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2507
                     /gene="1600012H06Rik"
                     /note="major polyA site"
ORIGIN      
        1 aggccggagt tggttcccaa aagccctcgc ttccggagta ccacacttcc gggcgcggcc
       61 tcttttccgc cagctggggc gagttccagg ctgagcccgg gtgctgcggg tgctgcgtgg
      121 cctgcggggc gtggcgcaca gcgactgcag atgagggagt ccccgagttg agtgccccag
      181 cgatggctac tccctggagg cgcgccctgt tgatgatcct ggcgtcccag gtggtgaccc
      241 tggtaaaatg tttggaagac gacgacgtcc cggaggagtg gctccttctg cacgtggtcc
      301 agggccaaat aggagccggg aattacagct acttgcggtt gaaccatgag ggtaaaatta
      361 ttctcaggat gcagagcctg agaggggatg cggacctgta cgtgtcggac agcactccgc
      421 acccgagctt cgacgactat gagctgcagt ctgtcacttg cggccaggat gtggtctcta
      481 taccggcaca cttccagcga ccggtcggga taggaattta tggacacccc tctcaccatg
      541 agagcgactt tgagatgagg gtatactatg acagaactgt ggatcagtac ccattcggag
      601 aggctgccta tttcactgac ccaacaggag ccagtcagca gcaggcttac gctccagaag
      661 aggcagccca agaggaggaa tcagttctct ggacgatatt gattagcatt ttgaaactgg
      721 tgcttgaaat tctcttctga tcccttgaat atgctggagc acaaaccctt attttcacag
      781 agcgattaca gtttgctgcg aacctagcta cttgacctgg tgaaactctg gttacttttt
      841 tctagactag gatggaaaaa taaagccata cagttttgtt acctcagttt actccccaag
      901 caggaaaagc agcaagcaca atattttaga gattaaaatt cctataaaaa ggagtctgct
      961 caataaaatg tttaaatgca ttttggttag tcaggtgagt aagaagatta cagtaacagg
     1021 ctgtataaat cagattaaac tttactgctg gtgcagaagt tgatgactgt agaatttata
     1081 gacatttaaa tgaagtacag cacttcgagt tttaaagtct ttaacatttt aaagccaggt
     1141 ggaaaatgca gtgacaggtt cgctcttccc agagcctctg cacagtaggg gtatggtacc
     1201 tgatacccaa gcaagctctc ctggcagcaa gtattgacaa actgttgctg tgctggtgat
     1261 ttagagtcca aatcctgttg taccagatct tgggccattt gccctttcct ctgcttagcc
     1321 agattggagc tttctggtta ttaggtaact atgatactac ctaatcaggt caagacagag
     1381 tcataacaag tggtaacttt gttatattca agaagaaata cttcaaatta agttgctact
     1441 acctctttct gctgatctct ggaaaaaaca acactatgaa attaaagcct ggggaaatga
     1501 gccatttctc tgactttgtt tcaagggtag aagttgctaa taaagaaata aatcaacttg
     1561 atgtttaagg tcatcgttaa tttcaaaaaa gtttttattg gcataaaaat gaaagtgttg
     1621 taaataaatt ggcaccaaat atcccaaaca tgagggtcaa agcctatttt acccctcttt
     1681 gctgtttttc ccccttctgc ccactttcct gggtgttggg ggagctcgct gacaacagtc
     1741 acaaatccag cgacctagga gaaaaattgt tagttaatat agagtggaat tttattttta
     1801 taggactgag tacaaaccat ctaatctcat tcctgagcta tctgtagtga taactccctg
     1861 ggatttttca gtgggaggga gtacagactg gttccttaag ccaaggaaga gaatgtaaac
     1921 aacccttaat cagtgtaacc aatgcagtgt gaacgttagt gcatggccaa acggcattgt
     1981 aaaaatcatt tgtaccttaa acaaaactac tgttaccctt ctgaaaattc aaataccatc
     2041 atgcttttga aagctcaaca acacaattcc taatgtagaa catgttaaag aagctggctt
     2101 tctatggcct tttcctccac tattctaaca gtgttctctc tctctctccc tctctatccc
     2161 tctccatgca ctttaaaact agcacctatc ccatacactt gatctgaatt actacaaaaa
     2221 cctaagtgac tattcaagtt gggtatttct aaaggacttc caggaccctt tttttataga
     2281 gtactatacg gtgttaacta tgcaactaag ttcttcaaat tgcacaatta cctgtataat
     2341 gttttaatag aattactgtg atttactatt tgaatctgtg tccatcctaa agttatctgg
     2401 aattgtcatg ttgcctcact ttataaaaat ctcttagcat atgtaaagac atcgcagtca
     2461 ctttgttaat agataacctt taaaaataaa accaaaccat tgagacaga
//
