LOCUS       NM_001404054             878 bp    mRNA    linear   ROD 13-FEB-2025
DEFINITION  Mus musculus RIKEN cDNA 1110065P20 gene (1110065P20Rik), transcript
            variant 3, mRNA.
ACCESSION   NM_001404054 XM_011240609
VERSION     NM_001404054.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL606933.4.
            
            On Apr 7, 2022 this sequence version replaced XM_011240609.4.
            
            Transcript Variant: This variant (3) represents the longest
            transcript and encodes the longest isoform (3).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17784648.537630.1,
                                           SRR17784650.616958.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-165               AL606933.4         90429-90593         c
            166-406             AL606933.4         90100-90340         c
            407-878             AL606933.4         89398-89869         c
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 57.92 cM"
     gene            1..878
                     /gene="1110065P20Rik"
                     /gene_synonym="C530005M16Rik"
                     /note="RIKEN cDNA 1110065P20 gene"
                     /db_xref="GeneID:68920"
                     /db_xref="MGI:MGI:1916170"
     exon            1..165
                     /gene="1110065P20Rik"
                     /gene_synonym="C530005M16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..502
                     /gene="1110065P20Rik"
                     /gene_synonym="C530005M16Rik"
                     /note="isoform 3 is encoded by transcript variant 3;
                     uncharacterized protein C1orf122 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C1orf122 homolog isoform
                     3"
                     /protein_id="NP_001390983.1"
                     /db_xref="GeneID:68920"
                     /db_xref="MGI:MGI:1916170"
                     /translation="MEWGPGAGWSRGEAAGVDRGKAGLGLGGRPPPQPPRDERAQQLL
                     DAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGVSAQCPLRAGPGENGSAKSGAPP
                     QPSVSARGGLPKDAGDGASES"
     exon            166..406
                     /gene="1110065P20Rik"
                     /gene_synonym="C530005M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            407..878
                     /gene="1110065P20Rik"
                     /gene_synonym="C530005M16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      859..864
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1110065P20Rik"
                     /gene_synonym="C530005M16Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      878
                     /gene="1110065P20Rik"
                     /gene_synonym="C530005M16Rik"
                     /note="major polyA site"
ORIGIN      
        1 aaagggaccg cgacccccag gcgacttgaa ggagaacggt ggggacgggg cggggctcgg
       61 cttagcggac tcctcgcgcg gcgcgggggg cggactgcgg aggggtggtg agcgggtggc
      121 acgggcggcg atggagtggg gtcccggcgc aggctggtca cggggggagg ctgccggcgt
      181 ggaccgtggg aaggcggggt tggggctcgg cgggaggcca cccccgcagc cgccccgaga
      241 tgaacgcgcc cagcagctgc tggacgccgt ggagcagcgg cagcggcagc ttctggacac
      301 catcgccgcc tgtgaggaga tgctgcggca gctgggccgc cggcgcccag aaccggctgg
      361 tggcggggtc agtgcccagt gccctctccg ggctggacct ggggagaacg gttcagccaa
      421 gtctggagcg ccgccccagc catctgtatc ggccagaggt ggccttccaa aggatgctgg
      481 cgatggagcc tcggagtctt gatcataccc tagccgggca ccctgacttc tgtccctttc
      541 cagggccagt ggctggactg tgaccaactc ccttcactaa aaggggccag tcttcacggg
      601 cagttgctgg tacttggccc tcagcctggg atggcaactc tactagcagc tgggttcact
      661 cccacgtcgt cctggctgaa ggcagtactg tgctttgaaa tggagccaac aaacatccag
      721 tcttgagtac tcggattcag gaagccagca gtgctggcca gagtggtctg gcctgctttg
      781 ggggttccag gtggtattac atgttcattt catgctttgg gggctctcag ccccacaaaa
      841 cacttgagca gagtcttgat taaaaggaaa tctgcaga
//
