LOCUS       NM_001347540            1538 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 1110038F14 gene (1110038F14Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_001347540 XM_006520348
VERSION     NM_001347540.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC157554.7, AK153059.1 and AK141496.1.
            
            On Nov 30, 2016 this sequence version replaced XM_006520348.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK153059.1, BE981332.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-248               AC157554.7         88492-88739         c
            249-966             AK153059.1         4-721
            967-1538            AK141496.1         560-1131
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 36.3 cM"
     gene            1..1538
                     /gene="1110038F14Rik"
                     /note="RIKEN cDNA 1110038F14 gene"
                     /db_xref="GeneID:117171"
                     /db_xref="MGI:MGI:2152337"
     exon            1..284
                     /gene="1110038F14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             279..947
                     /gene="1110038F14Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UPF0488 protein C8orf33 homolog"
                     /codon_start=1
                     /product="UPF0488 protein C8orf33 homolog isoform 1"
                     /protein_id="NP_001334469.1"
                     /db_xref="CCDS:CCDS84175.1"
                     /db_xref="GeneID:117171"
                     /db_xref="MGI:MGI:2152337"
                     /translation="MAEPGRPAREAPAASSRKTHRAPRRPRPSRSASGASEPPLRSSV
                     QPACDSAAGTHPVGNTVAMKQKKKKTPNRVSGTNGSEKPSEKPAPDEAPPSAEAQAEQ
                     LARELAWCVEQLELGLKTQRPTPKQKEQAVGAIRTLRSEKTPLPRKRQLMRSLFGDYR
                     AQMDAEWREALRALKAATHSAQVQLVSEATRKKSGRVCRPRPAERAKTTPDLTSEEFR
                     FNFF"
     exon            285..575
                     /gene="1110038F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            576..660
                     /gene="1110038F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            661..807
                     /gene="1110038F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            808..1538
                     /gene="1110038F14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1271..1276
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1110038F14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1291
                     /gene="1110038F14Rik"
                     /note="major polyA site"
     regulatory      1522..1527
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1110038F14Rik"
                     /note="hexamer: AACAAA"
     polyA_site      1537
                     /gene="1110038F14Rik"
ORIGIN      
        1 ggttccattc tctccaggaa tcaattgtct tgtttcttgg cggcacactc tgctgggttc
       61 tccgaggcct ttaagttcat ccccgtgcac tctgtctcct aaaattacaa gcacagcctg
      121 aggcgctcca tccacccaag tgctttctgt ccggcgctga gcgcttgctc tggctccgct
      181 gcgctttctg cggaaccttg tgtcgtagac gtgtttccag aggagtgagt tcgctgtggt
      241 agttaggatt taccagcttc cggcggccgc tccgactaat ggcggagcca gggcgtcctg
      301 ctcgggaggc accagcagcc tcaagtcgga aaactcatcg cgctccgcgc agaccccggc
      361 cctctcgctc agcttccggt gcctcggaac ctcctctccg cagttcagtg caacctgcat
      421 gcgactccgc cgccggaacc catcccgtag gcaacacagt agcgatgaag caaaagaaaa
      481 agaaaacccc caacagggtc tctgggacaa atggaagcga aaagccctcg gagaaacctg
      541 ccccggacga agctcctcct agcgctgagg cccaggcgga acagctggcg cgggagctgg
      601 cctggtgtgt ggaacagctg gagctgggtc tcaagacgca gagacctacc ccgaagcaga
      661 aagagcaggc tgttggggca atccgaacgc tgcgcagtga aaaaaccccc ttgccccgga
      721 agagacagct gatgcgctcc ttgtttgggg actacagggc tcagatggat gcagagtggc
      781 gggaggccct acgggctcta aaggctgcca cccattcggc ccaggtacag ctcgtcagtg
      841 aggccaccag aaagaagagc ggaagggtct gcaggcctcg tcctgcagaa agagccaaaa
      901 ccactccgga cttgaccagc gaagagtttc ggttcaattt cttttagggt ctcctacatg
      961 ctggaccgct catccccctc cagggtgggg tggggatgtg tcctgattgc agggccttcc
     1021 caggaattct ctcagcagaa gtggggttgg tttgtccttc attgcagcat ggacctgaag
     1081 cggctggcct atgtgaggct gctatgtgga tgtggaaacc tttgaaggaa atgttcttca
     1141 tgtcagaaga gaggtgcaga gtagctgctg atgataagga actgtgggga agttgtggac
     1201 acagtgggct cacttttgaa aagatgctca ggccattttt ctagtgcttt gtatattgtt
     1261 atatcgcctt aataaatctt ttctaaggaa ataggatggt gtgagagaga gagttccgaa
     1321 tgtgttagag gaggcaagac tgcttggtcc agctctgatc caggacttag tcctttgctg
     1381 ctgttgttgc tgtttccctc agcaggttgt cgtcttctgg agccagtgtg gtctccatca
     1441 agccacgttt tgtttttagg agctaagaag ctactcactg tcttagcctg agctgagtct
     1501 tagcagactg catcaaaaca aaacaaacac aacacaac
//
