LOCUS       NM_019772               1428 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 1110004F10 gene (1110004F10Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_019772
VERSION     NM_019772.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1428)
  AUTHORS   Bailey,P.J., Klos,J.M., Andersson,E., Karlen,M., Kallstrom,M.,
            Ponjavic,J., Muhr,J., Lenhard,B., Sandelin,A. and Ericson,J.
  TITLE     A global genomic transcriptional code associated with CNS-expressed
            genes
  JOURNAL   Exp Cell Res 312 (16), 3108-3119 (2006)
   PUBMED   16919269
REFERENCE   2  (bases 1 to 1428)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
REFERENCE   3  (bases 1 to 1428)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC160535.3.
            
            On Mar 21, 2023 this sequence version replaced NM_019772.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB025407.1, BC072575.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               AC160535.3         69464-69637         c
            175-258             AC160535.3         63466-63549         c
            259-319             AC160535.3         60985-61045         c
            320-429             AC160535.3         59669-59778         c
            430-1428            AC160535.3         57779-58777         c
FEATURES             Location/Qualifiers
     source          1..1428
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 61.42 cM"
     gene            1..1428
                     /gene="1110004F10Rik"
                     /gene_synonym="sid2057; sid2057p; Smacp; Smap"
                     /note="RIKEN cDNA 1110004F10 gene"
                     /db_xref="GeneID:56372"
                     /db_xref="MGI:MGI:1929274"
     exon            1..174
                     /gene="1110004F10Rik"
                     /gene_synonym="sid2057; sid2057p; Smacp; Smap"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..657
                     /gene="1110004F10Rik"
                     /gene_synonym="sid2057; sid2057p; Smacp; Smap"
                     /note="isoform 1 is encoded by transcript variant 1; small
                     acidic protein sid2057p; sid 2057"
                     /codon_start=1
                     /product="small acidic protein isoform 1"
                     /protein_id="NP_062746.1"
                     /db_xref="CCDS:CCDS21766.1"
                     /db_xref="GeneID:56372"
                     /db_xref="MGI:MGI:1929274"
                     /translation="MSAARESHPHGVKRSASPDDDLGSSNWEAADLGNEERKQKFLRL
                     MGAGKKEHTGRLVIGDHKSTSHFRTGEEDKKINEELESQYQQSMDSKLSGRYRRHCGL
                     GFSEVEDHDGEGDVAGDDDEDDSPDAESPDDSDSDSESEKEESAEELHAAEHPDDTED
                     PKSKKDAKSNYKMMFVKSSGS"
     exon            175..258
                     /gene="1110004F10Rik"
                     /gene_synonym="sid2057; sid2057p; Smacp; Smap"
                     /inference="alignment:Splign:2.1.0"
     exon            259..319
                     /gene="1110004F10Rik"
                     /gene_synonym="sid2057; sid2057p; Smacp; Smap"
                     /inference="alignment:Splign:2.1.0"
     exon            320..429
                     /gene="1110004F10Rik"
                     /gene_synonym="sid2057; sid2057p; Smacp; Smap"
                     /inference="alignment:Splign:2.1.0"
     exon            430..1428
                     /gene="1110004F10Rik"
                     /gene_synonym="sid2057; sid2057p; Smacp; Smap"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1404..1409
                     /regulatory_class="polyA_signal_sequence"
                     /gene="1110004F10Rik"
                     /gene_synonym="sid2057; sid2057p; Smacp; Smap"
                     /note="hexamer: AATAAA"
     polyA_site      1428
                     /gene="1110004F10Rik"
                     /gene_synonym="sid2057; sid2057p; Smacp; Smap"
                     /note="major polyA site"
ORIGIN      
        1 gcgttctgga gtggcgctgc ttggtccggc ggctgggtga gggctgctgg tgtcgcgttt
       61 gaggagaact gcgagtgtgt ttggcatatc cccgtcagga tcccagctac gatgagtgct
      121 gcccgggagt ctcacccgca cggggtgaaa cgttcagcct cccccgacga cgatcttgga
      181 tctagcaatt gggaggcagc agacttaggc aatgaagaaa gaaaacaaaa gttcttgaga
      241 ctcatgggtg caggaaagaa agaacacact ggtcgtcttg ttataggaga tcacaaatca
      301 acatctcact tccgaacagg ggaagaagac aagaaaatta atgaagagct ggagtctcag
      361 taccagcaga gcatggacag caaactgtca ggacggtacc ggcggcactg cggcctcggc
      421 ttcagtgagg tagaagatca tgatggagaa ggtgatgtgg ctggagatga cgatgaggac
      481 gactcccctg atgctgagag tccagatgac tcggacagtg actctgagtc tgagaaggag
      541 gagtctgcag aagagcttca tgctgctgag catcctgacg acacagaaga cccgaagagc
      601 aaaaaagatg cgaagagcaa ttataagatg atgtttgtca agtccagtgg ctcctaacta
      661 ccaaacactt agtctttgta ttaaaagtaa gccttattgt tataatgcac agtggaggac
      721 tgcttataga gcacagacct ttgtattata atttttaaaa aggccctttt aaataactac
      781 aaagagtgtt tgctttcaaa tgccatgggt tacatttctc caggcatgac tataaccatt
      841 tttgtaaaga gtccgagttg tataaaatga gaaataaatg ctgtactcag cttcccttca
      901 tgttagcatc atctgccctc tcccccgttt gcctctgcag gtgcattatg ggggatactt
      961 gccttgtttg tggcagctcc ttcatcttca tcttttggtt tgttcctatt ttgctcttac
     1021 ataattcatc tgatactgtg acgtgttccc ttggttatac tttgttaaag tagacctgtc
     1081 cgtcatggag ttggctgcca ccagccctgc tgcagaccat cactgacagt ccatgcttgt
     1141 ttagtctttg ctcgtggacc agagcaagca caggacactt atgtgtggaa gtgccctgtc
     1201 acatcattca aaggttgcaa acccaaaatg tctttatata agttgatttt actgtatggt
     1261 aaagttttga taaaatttgg ccagttttta cagaagaaat tatttctctg ctcatttagt
     1321 cctgtgtatt tagaaatatg taaaactgga ttttttttta aggtactatg tgaccaaagt
     1381 tcattttttc ctcctaaggt ctaaataaag agaaagcagt ttcccata
//
