LOCUS       NM_001417897            2144 bp    mRNA    linear   ROD 07-JAN-2025
DEFINITION  Mus musculus PDCD10 and GCKIII kinases associated 1 (Pgcka1),
            transcript variant 2, mRNA.
ACCESSION   NM_001417897
VERSION     NM_001417897.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2144)
  AUTHORS   Elsen,G.E., Hodge,R.D., Bedogni,F., Daza,R.A., Nelson,B.R.,
            Shiba,N., Reiner,S.L. and Hevner,R.F.
  TITLE     The protomap is propagated to cortical plate neurons through an
            Eomes-dependent intermediate map
  JOURNAL   Proc Natl Acad Sci U S A 110 (10), 4081-4086 (2013)
   PUBMED   23431145
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114408.18 and AC158789.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422591.332134.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-106               AC114408.18        46249-46354         c
            107-156             AC158789.4         189671-189720       c
            157-277             AC158789.4         182093-182213       c
            278-419             AC158789.4         177984-178125       c
            420-473             AC158789.4         169687-169740       c
            474-2144            AC158789.4         166545-168215       c
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 32.8 cM"
     gene            1..2144
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /note="PDCD10 and GCKIII kinases associated 1"
                     /db_xref="GeneID:76261"
                     /db_xref="MGI:MGI:1923511"
     exon            1..106
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            107..156
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            157..277
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            278..419
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            420..473
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             442..1383
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /codon_start=1
                     /product="uncharacterized protein C4orf19 homolog"
                     /protein_id="NP_001404826.1"
                     /db_xref="GeneID:76261"
                     /db_xref="MGI:MGI:1923511"
                     /translation="MGCRCCKMIQSYLFDPVQVPSPGFVNEVNNCKLEEDDTVRLKGT
                     QNSEVEVPRNALHDGSLSNSESRGSTTGLPHQGPLPQEDSEERPCVEKQGIVNGISPT
                     ATLQSVRSSRLHQVDNSSWASSPWVATIDSAHLAQPFLEGEDYRKQSCLLPTLEGTQM
                     VGHGDCRAPAEALAVADHIPYIPAPDYPQLWSPTVDNADPEEKDCLFENHSEVEPLPG
                     IQPRVSQLGLNVPFSLQRSWDSLNEAGTTEVLSDYFKEEGPTHPTPAADSGSEREDPH
                     TYNGDREGVVVDEDAEVAEALAALEAATAGEDADDAD"
     exon            474..2144
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2118..2123
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2144
                     /gene="Pgcka1"
                     /gene_synonym="0610040J01Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcgacaggct ccgggcgtcg ctgacccact cgcgtgtccc agcgcggacg cccgaggccc
       61 acgaagccat gggcgccgcg actctggagc cgccgccccg ccgcaggaag agcggtttaa
      121 cacccagaga agcctaatgg acaagcgccc cagcaggctc cagcaggtat ggcccagatt
      181 aaaggttgtg taccaccaca cctggatcgg aacttgcttt gtctcaggct ggccttgaac
      241 tcagagctct ccttgcctcc gtctcctggg attaacgcat atctgttgga acctaattct
      301 tcaggatccc agcttgtaca gaagaccagt acacccagcc ctgagggact gagcgactac
      361 tagactcttg gacttcccat tcacagctgc ccattgttgg gttacttgga ctgcagccta
      421 tggtaacaaa agataatcca gatggggtgc aggtgttgta agatgataca aagctatctc
      481 tttgatccag ttcaagtgcc ctcgcctggt tttgtcaatg aagtaaacaa ctgcaagttg
      541 gaggaagatg acactgtcag actaaaaggc acccagaaca gtgaggttga ggtgcccagg
      601 aatgccctgc acgatgggag cctgagcaat tcagagagca gaggcagtac aactggtcta
      661 cctcaccaag gaccgctccc ccaggaggac tcagaagaga gaccctgtgt ggagaagcag
      721 ggtattgtca atggcatcag ccccactgct actctgcagt cggtcaggag ttccaggctc
      781 caccaggttg acaatagctc ctgggccagc agcccctggg tagccaccat agacagtgct
      841 cacctggctc aacccttcct tgaaggagaa gactacagga agcaaagctg cctgctgccc
      901 accttggaag ggacccagat ggtgggacat ggagactgca gagcccctgc ggaggccttg
      961 gcagtggcag atcacatccc atacatacca gccccagatt atccccagct ctggagcccc
     1021 acagtagaca acgcagaccc tgaagaaaag gattgtcttt ttgaaaacca ctctgaggtg
     1081 gagccccttc cgggaattca gcccagggtg agccagctgg gtttgaacgt gcccttctcc
     1141 ctgcagagaa gctgggactc actgaatgag gcagggacca cagaagttct gagtgactac
     1201 ttcaaagagg agggtcccac tcaccctacg ccagcggctg attctggaag tgagcgggaa
     1261 gacccccaca cctacaacgg ggacagggag ggtgttgtgg tagatgagga tgctgaggtg
     1321 gcagaagccc tcgcagcatt agaagctgct accgcaggag aagatgcaga tgatgccgat
     1381 tagggggagg ggggaggcga ggcgagggag cttcagtcac agggagcaga tagaagcatg
     1441 tgcctactct gccagcatgc cccggcagcc ttgccagctg gaccagttgt ttacatctgt
     1501 tatcttccca ttgccagtac ctgtgccatg ctgcttgctg tatagggcat ccctctactc
     1561 cgaatgcatt cagaatgcta gcatcaaaat aagagtgggc cttcatgtcc atgaccacaa
     1621 caagtgcgga agttaagcag cttgcatgct gtccctgaaa gtgccccccc agaacatctg
     1681 tccagatgtg cacgagaatg cccggacatc cccactcttg atcccagggg ccattctgtt
     1741 tgaatgtatt tctttacctt gtttttgaga gccaaatact tcacccaacc tagaaaaagg
     1801 taacgatcca cttaaagtgc ctactgtgtg ccagagctta acttcaggga cagtcaccca
     1861 gggaaatact aactaaccac ttgttgaaca tcaagtaccc ttcagggtag agcagacttg
     1921 aactgtgaac aaatggttag tcctccactg tgctaggaga gcaccctgac cttaactttt
     1981 ttttacacta ttacttttta atctcctttg ggatacggga ggctggccaa aatacttctc
     2041 aaaactgtcg tcatgttcta ggttcgagtt cgtgagtgtt ttgtaacagc ctagccattt
     2101 atgaagggct ctgtgtcatt aaacgtctgg ttctcactaa agca
//
