LOCUS       NM_026696               4649 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA 0610030E20 gene (0610030E20Rik), mRNA.
ACCESSION   NM_026696 XM_132614 XM_910556
VERSION     NM_026696.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4649)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB844069.1, BC066053.1, AC116115.11 and BE945833.1.
            
            On or before Apr 9, 2009 this sequence version replaced
            XM_910556.2, XM_132614.6.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC066053.1, AK002701.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                BB844069.1         1-26
            27-3619             BC066053.1         1-3593
            3620-3627           AC116115.11        116234-116241
            3628-4622           BC066053.1         3598-4592
            4623-4649           BE945833.1         1-27                c
FEATURES             Location/Qualifiers
     source          1..4649
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 32.27 cM"
     gene            1..4649
                     /gene="0610030E20Rik"
                     /gene_synonym="1500031N04Rik; 2810411C16Rik"
                     /note="RIKEN cDNA 0610030E20 gene"
                     /db_xref="GeneID:68364"
                     /db_xref="MGI:MGI:1915614"
     exon            1..199
                     /gene="0610030E20Rik"
                     /gene_synonym="1500031N04Rik; 2810411C16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             93..593
                     /gene="0610030E20Rik"
                     /gene_synonym="1500031N04Rik; 2810411C16Rik"
                     /codon_start=1
                     /product="UPF0561 protein C2orf68 homolog"
                     /protein_id="NP_080972.1"
                     /db_xref="CCDS:CCDS51808.1"
                     /db_xref="GeneID:68364"
                     /db_xref="MGI:MGI:1915614"
                     /translation="MEAAQDHGPGLCCKPGGRLDMSHGFVHHIRRNQLDRDDYDKKVK
                     QAAKEKARRRHTPAPTRPRKPDLQVYLPRHRDGSTHPVNPDCEEASESSSSGSSELEP
                     PGRQLFCLDYEADSGEVTSVIVYQDDDPGRVSEAVSAHTPLDPAMREALRSRIQEELA
                     KRQSRH"
     exon            200..318
                     /gene="0610030E20Rik"
                     /gene_synonym="1500031N04Rik; 2810411C16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            319..470
                     /gene="0610030E20Rik"
                     /gene_synonym="1500031N04Rik; 2810411C16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            471..4636
                     /gene="0610030E20Rik"
                     /gene_synonym="1500031N04Rik; 2810411C16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4603..4608
                     /regulatory_class="polyA_signal_sequence"
                     /gene="0610030E20Rik"
                     /gene_synonym="1500031N04Rik; 2810411C16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4622
                     /gene="0610030E20Rik"
                     /gene_synonym="1500031N04Rik; 2810411C16Rik"
                     /note="major polyA site"
ORIGIN      
        1 gaggtcggcg gccggaagtc atggtccgca gccgaaggcc ctaattccgc ggcagttgtg
       61 gcggttacgg cggttctgta cccagcatac gaatggaggc ggcccaggat cacgggccgg
      121 ggttgtgctg caagcccggc gggcgtctgg acatgagcca cggcttcgta caccacatcc
      181 gtcggaacca gctcgatcgg gacgactacg acaagaaggt gaagcaggcg gccaaggaga
      241 aggcgaggag gcgccacacg cccgcgccca cgcggccccg caagccagac ctacaagtgt
      301 acctgccgcg ccaccgagat ggctccaccc accccgtgaa cccagactgt gaggaagcca
      361 gtgaaagcag cagtagtgga agctccgagc tagagcctcc tggccgccag ctcttctgtt
      421 tagactatga ggcggacagt ggcgaggtca cttcagttat tgtctatcag gacgatgatc
      481 ctggaagggt gagtgaggca gtatcagcac acacacctct ggatccagcc atgcgggagg
      541 ccctcagatc gcgaatccag gaggaacttg caaaacgcca gagccggcac tgacggggcg
      601 gaggcaggat tcactgcact tggcagaatt ttgcccaagg agctcacccc tagtttgggg
      661 ggtgtcagga tgagtccatg tgatcttcag ggagcctgtc ctccttctct aagctgctgt
      721 atccacaaag gtcttgcagg accacatctg acctgtctct cagcagccat ttttcttgtc
      781 tcattcatct aacctaacat tctggaattt tatgacagct ttggctaact tggtgttttg
      841 ggagcagaga ctttagggag agccaggctt tctgaagctt ttgcctgtgt ggtgctgtct
      901 tgatgaggtc gtttgtcagg ccccttcatg tttctgcttt cttccactca tctttgccta
      961 ggcctgtttt cagctgtcac ttttcctttc tcctatcttt ttgccttagg tagaatctat
     1021 gtcccccacc cccagcatga ctgtttctct gccactcagg aatttagcat gggacttctg
     1081 ggagcctgcc ttcctaacaa ggtctccaag tacttctgat gccaataaac aggagagctt
     1141 tggttttgag gcctctttgg aagcacatgt ccttcccctt ttgtggcttg cccaagctcc
     1201 tcataggcct cactgcttaa aactgtctac gtaggagacc caggaagaag atgctgagct
     1261 aagctgcagt ccttagttga aaaacctgtc ctgctactcg tggtggcaca tgcctttagt
     1321 cccagtactc aggactcagg aggtagagat gggtagatct ctgtgagttc aaagccagcc
     1381 tggtcatatc aacacatcta gttccaggac agacagtggt tgagagagcc tatctcaaaa
     1441 caaaacaaaa aaagaagaag aagaagaaga tgaacccgcc ttggctaggc ttaccaaatt
     1501 caccatctag ctgtaaagca actaccttct gctcagacta aaggggaatt atcaaagcag
     1561 tcttaaaagt aactcttcaa ttgtagttta gcaatcttga atgaatgaag ttgagagagt
     1621 tgacaatagc tataattgtt ctggggcagg agggctctag ttgcaaaaaa gagagagttg
     1681 tgaagaacat cacagaggaa gtgaaatggc cctttctctg ccccatgctt tctttcctac
     1741 ctcccaagaa tatgtctgag cctgatgaga cacactttaa ccccagcatg aaagaggcca
     1801 aagtatgagg actgctgcaa gttaaagacc aacctaagct gtctcaagaa aaaactaaat
     1861 aaatgtaact taggtccttt gggtaaagat ccccagacat agcatttttc caacggggga
     1921 catgtttttc aacacaagct taggctaagg tctgaagtcc acaagacatc ctgttcacag
     1981 aattcaggtg cacctacgat ttcctgacat aggaacctaa cttcagcatc ttgaaacatg
     2041 aatcataaaa cagcctacaa gccctgagac tgcccacaac caaacctcct accccagggc
     2101 tttgtcttct aggatttcaa gatcattctg actgtatgag ttcagtagct ttctcttcag
     2161 ggacacttgc gatccctcct gtgttttatc ccactctgct gaaaacatgt aatatagttg
     2221 gccatctgct ttacgccatt aaaacagtga gtcacagctt gccatgccag aactctggga
     2281 cttgagttag gtggtaagtt agaagggcct ggttctagag gtggccggag acctgaatgc
     2341 tctaaaccag gagagctggt ctcagggttc agtgccttaa gcattgtcag tcctaatccc
     2401 aggatgctgt caaagggaaa agccttcatc ctgtacttgt gcactagtgc tgtaagtgcc
     2461 tgtggactta catggttaga taccatcaga gcctcccggg tgaaggaggg tctgccaaac
     2521 tccatgctct tcatcctgca agtcactata gtctccagtt aatcagtcca tattctgact
     2581 tgaaacacag gattcactgg aacgctggtc gggacaaaga acattggaac tttttggggg
     2641 tctgtgttct tagagctgtg cttcctatat cctgattctg ttattgaacc aaaaaacacc
     2701 tgaagaatct gaggacccga cacctacaaa tttgccgtta ttcccacttc ttgatgaagg
     2761 aatagctaga tgaacaaagt gttctgcaga ggccttttat gtgtttatgt ggtcctcaaa
     2821 gacctcagat aggagactgg tggaaacttc tctaagttct ttttccagaa gcactttgct
     2881 tatcagtgtg tatgaaagat tttctagcta agaaagctct cttgattctt gctagtttat
     2941 cctgtatgac tacctaaagc cccaagcctg tgcctaaatg aagagtggtc attctgagcc
     3001 agcctgttag agctgatgtt tctaggcctc ctccctaaaa tgcctcttgg ggctgccctc
     3061 agccttatgg cttagcttga ttgctctgct ggcctattct ggggtctgta ataatactgg
     3121 ccagtttatt tggcagacct gcttccagat agatgtctct taacctattt caaaactcac
     3181 gggccatagt gagttctcag aactgcccag tgtttttgca cagtaggcag gacttaacta
     3241 caaactgcct cagaatcaac attcatttga atagataagt tcttatctgt cttttgtgtg
     3301 tgtgtggggg ggggggagat gggggcaagg gagactgggc tacaggtatg acggtacatg
     3361 ccagtaatcc cagcatttga aaggctgaga taaaaggttt gccccatgtc ccagaggcag
     3421 gaaggtcttt tagtttgagg ccagccttat ctacaaagca agttccagac aaccaggact
     3481 atgtagagag accctgtctc aaacccctac ccccatttct ttctttcttt ctttctttct
     3541 ttctttcttt ctttctttct ttctttcttt ctttctctct ctctctctct ctctctctct
     3601 ctctctctct ctctctctct ctctcctctc ctctcctctc ctctcctctc ctctcctctc
     3661 tctcctctct ctctcttctc ttccttctcc tcttctctct ctcccctctc tctcttctct
     3721 ctctggaatg gttttttccc ctcagttctt aactagaatt aagcctgtat tttacagttt
     3781 tgtgattcct gaactgagta tatattattt ataagagaga attggttttg caagggggtt
     3841 tgggctgtgc aagaataatg ataaaaactg gggttgtacc ccactgacaa gcatgaatga
     3901 ctttgaagag tgtggagcaa gaagggaaaa gatatataag tgtatatgat gagaataaag
     3961 tatatactgg ctgcagtcta gccagcaggg gtggatctaa aataaatgtg aaagaacatt
     4021 ccatctctct gatcatctgg ggtgcattgc taactagaga gcagcccaga caggtgggaa
     4081 gctctttggg tggtgagtat ctagcctgct gtgtgtttga caagacctgt gtcagggtgg
     4141 tgcttcccag ataactcgaa tttaaatgag acctttgtat aatgagcatt cgactttcct
     4201 acctctgagc cttttgaaga aattgcatat ggaatgttga cagttatttg aaaccttaac
     4261 tcttttgaat tcctgaggag ctgttggcat ccagcccaaa tttccttggt gttagagtac
     4321 tgctagaagt gaaagccttc ctagttaggg gttcctcctt tcccagagca aacagaacaa
     4381 gaggttggga atggtggtga acagctcaag agacagagat aggaggatca ctgtatgttt
     4441 gagagtagcc taagctacac agcaagcatc agcgtgtcct ggctatgtca tggtgctaaa
     4501 tgcagaaaaa gccatacatt ctttttctca tttccagtgt ttctgtataa aaaaatgaat
     4561 tatgcaaact gtttgaaaat catggacggt actttttaaa ccaataaact atttttacag
     4621 catttttttg ccaaaaaaaa aaaaaaaaa
//
