LOCUS       NM_080752               2776 bp    mRNA    linear   PRI 06-JUN-2024
DEFINITION  Homo sapiens zinc finger SWIM-type containing 3 (ZSWIM3),
            transcript variant 1, mRNA.
ACCESSION   NM_080752 XM_938235
VERSION     NM_080752.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Hassan,I.U., Rehman,H.M., Liu,Z., Zhou,L., Samma,M.K., Wang,C.,
            Rong,Z., Qi,X., Cai,D. and Zhao,H.
  TITLE     Genome-wide identification and spatiotemporal expression profiling
            of zinc finger SWIM domain-containing protein family genes
  JOURNAL   Zool Res 44 (3), 663-674 (2023)
   PUBMED   37161653
REFERENCE   2  (bases 1 to 2776)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   3  (bases 1 to 2776)
  AUTHORS   Deloukas,P., Matthews,L.H., Ashurst,J., Burton,J., Gilbert,J.G.,
            Jones,M., Stavrides,G., Almeida,J.P., Babbage,A.K., Bagguley,C.L.,
            Bailey,J., Barlow,K.F., Bates,K.N., Beard,L.M., Beare,D.M.,
            Beasley,O.P., Bird,C.P., Blakey,S.E., Bridgeman,A.M., Brown,A.J.,
            Buck,D., Burrill,W., Butler,A.P., Carder,C., Carter,N.P.,
            Chapman,J.C., Clamp,M., Clark,G., Clark,L.N., Clark,S.Y.,
            Clee,C.M., Clegg,S., Cobley,V.E., Collier,R.E., Connor,R.,
            Corby,N.R., Coulson,A., Coville,G.J., Deadman,R., Dhami,P.,
            Dunn,M., Ellington,A.G., Frankland,J.A., Fraser,A., French,L.,
            Garner,P., Grafham,D.V., Griffiths,C., Griffiths,M.N., Gwilliam,R.,
            Hall,R.E., Hammond,S., Harley,J.L., Heath,P.D., Ho,S., Holden,J.L.,
            Howden,P.J., Huckle,E., Hunt,A.R., Hunt,S.E., Jekosch,K.,
            Johnson,C.M., Johnson,D., Kay,M.P., Kimberley,A.M., King,A.,
            Knights,A., Laird,G.K., Lawlor,S., Lehvaslaiho,M.H., Leversha,M.,
            Lloyd,C., Lloyd,D.M., Lovell,J.D., Marsh,V.L., Martin,S.L.,
            McConnachie,L.J., McLay,K., McMurray,A.A., Milne,S., Mistry,D.,
            Moore,M.J., Mullikin,J.C., Nickerson,T., Oliver,K., Parker,A.,
            Patel,R., Pearce,T.A., Peck,A.I., Phillimore,B.J.,
            Prathalingam,S.R., Plumb,R.W., Ramsay,H., Rice,C.M., Ross,M.T.,
            Scott,C.E., Sehra,H.K., Shownkeen,R., Sims,S., Skuce,C.D.,
            Smith,M.L., Soderlund,C., Steward,C.A., Sulston,J.E., Swann,M.,
            Sycamore,N., Taylor,R., Tee,L., Thomas,D.W., Thorpe,A., Tracey,A.,
            Tromans,A.C., Vaudin,M., Wall,M., Wallis,J.M., Whitehead,S.L.,
            Whittaker,P., Willey,D.L., Williams,L., Williams,S.A., Wilming,L.,
            Wray,P.W., Hubbard,T., Durbin,R.M., Bentley,D.R., Beck,S. and
            Rogers,J.
  TITLE     The DNA sequence and comparative analysis of human chromosome 20
  JOURNAL   Nature 414 (6866), 865-871 (2001)
   PUBMED   11780052
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DA520427.1 and BC027611.2.
            
            On Nov 22, 2018 this sequence version replaced NM_080752.3.
            
            Transcript Variant: This variant (1) is the protein-coding
            transcript.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BP279323.1, AK056641.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000255152.3/ ENSP00000255152.2
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-15                DA520427.1         34-48
            16-2776             BC027611.2         6-2766
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="20"
                     /map="20q13.12"
     gene            1..2776
                     /gene="ZSWIM3"
                     /gene_synonym="C20orf164; PPP1R174"
                     /note="zinc finger SWIM-type containing 3"
                     /db_xref="GeneID:140831"
                     /db_xref="HGNC:HGNC:16157"
                     /db_xref="MIM:620336"
     exon            1..367
                     /gene="ZSWIM3"
                     /gene_synonym="C20orf164; PPP1R174"
                     /inference="alignment:Splign:2.1.0"
     CDS             213..2303
                     /gene="ZSWIM3"
                     /gene_synonym="C20orf164; PPP1R174"
                     /note="zinc finger, SWIM domain containing 3; protein
                     phosphatase 1, regulatory subunit 174"
                     /codon_start=1
                     /product="zinc finger SWIM domain-containing protein 3"
                     /protein_id="NP_542790.2"
                     /db_xref="CCDS:CCDS13381.1"
                     /db_xref="GeneID:140831"
                     /db_xref="HGNC:HGNC:16157"
                     /db_xref="MIM:620336"
                     /translation="MELGSCFKTYEDFKECFSAYKRENRCSFILRDCVSVRFHNLNHG
                     TSIREDILYVQVKFVCIRTQSNRKRTREADMCPAYLLLRYNERLDRLFISELNTQHIH
                     GDSKVASPGGDTTGKSQKTMCLQRLQPVQPTTKKDLDTAEKSLVEPSFCLDKVQVSSK
                     PEQEGITPSDLAKIAKVMKNFLKVDEGSMASFSVGDSQHLDRLSFQSSKMTDLFIRFP
                     ENLLLHRVENTQGHILYAFLVENKERESRVVHFAVLKAETVTSVAKMLSIFTEFNSDW
                     PKVKVVFVDPSFHYRAILQEIFPAARILLSIYHTTRLLEKKLHRSSANPSFKRLMKEA
                     LREAVFVTSEASLKNLCQMSQAVLDEDLFNFLQAHWFTCELLWYMHVRKGLLACNTYM
                     DSLDIVTSKVSSLFREQQSLLDCILCFVDYIDFFNTKGLKNLPTPPPKLKRARPASMP
                     LKSKKAFGICGESLTSLPAEETKPDAQQVQVQQQSQVPPSQVGMLDTLHQSGSELAYK
                     LCHNEWEVVQNSTHLVDMAGSSVDVQLLEDSHQVSKDGCSCSCSFQQWYHLPCRHILA
                     LLHTSQQPVGEAMVCRRWQKKYQYLLGPNGELQDRGMVPNTGQPEKQGRNDMIQDLSR
                     ELANLLMQTEGPELEERYSTLRKIVDIWAGPSQPSELFQQPGDFKDVGRLPFLWGKQE
                     EGEGFPPATAVMHY"
     exon            368..2776
                     /gene="ZSWIM3"
                     /gene_synonym="C20orf164; PPP1R174"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2750..2755
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZSWIM3"
                     /gene_synonym="C20orf164; PPP1R174"
                     /note="hexamer: ATTAAA"
     polyA_site      2776
                     /gene="ZSWIM3"
                     /gene_synonym="C20orf164; PPP1R174"
                     /note="major polyA site"
ORIGIN      
        1 gtcagatagc aaatacaccc ccttcctctt gtaacccggt caggcctagg gttcctccct
       61 gagttccaga ataggccacc cagttggggc ggacccttaa ggcattctgg gcccacgcct
      121 gcctataaac cctcatagtg tgacctttga cccctggtgt gatcttgggc ccgggctggg
      181 accagcccct agtgtgggtt gtgggggcgg ccatggagct gggcagctgc ttcaagacct
      241 atgaggactt caaggagtgc ttcagcgcct acaaaaggga gaacaggtgc tccttcattc
      301 tcagggactg cgtctccgtc cgcttccaca acctcaacca tggcacctcc atccgcgaag
      361 acatcctgta tgtgcaggtg aaatttgtct gcattcggac ccaatcaaac aggaagagaa
      421 cgcgggaggc agacatgtgc ccagcgtact tgctcctaag gtacaacgag agactagata
      481 gactatttat cagtgaacta aacacacagc acatacatgg tgactctaaa gtggctagtc
      541 ctggaggaga caccactggc aaatctcaaa agacaatgtg cctgcagaga ctccagcctg
      601 tgcagcccac aaccaaaaaa gaccttgaca ctgccgagaa gtccctggtt gagccatcgt
      661 tttgcctaga taaggtacaa gtgtcctcaa agccagagca ggaaggcatc actccttctg
      721 acctggccaa gatagcaaaa gtgatgaaga actttcttaa ggtagatgag ggttccatgg
      781 cttccttcag tgtgggtgac agccagcacc tggaccggct cagcttccag agcagtaaga
      841 tgaccgacct gttcatccgc ttcccagaga atctcttgct acaccgggtg gagaacaccc
      901 agggccacat cctctatgct ttcttggtgg agaacaagga acgagaaagt cgagtggtgc
      961 actttgctgt gctcaaggcg gagacagtca cctctgtggc caagatgctg agcatcttca
     1021 cagagttcaa ctccgattgg cccaaggtca aggtggtctt tgtggaccct tcattccatt
     1081 accgggctat cctgcaggag atctttcctg ctgcccgcat cctcctttcc atctaccaca
     1141 caacccgact cttggagaag aagttgcatc gtagttcagc aaatccatcc tttaaaaggc
     1201 tcatgaagga agccctgcgg gaggccgtgt ttgtcacttc tgaagccagc ctgaaaaatc
     1261 tctgccagat gtcccaggcc gtactggatg aggatctctt caacttcctg caggcccact
     1321 ggttcacctg tgaactgctg tggtacatgc atgttaggaa gggcctgctt gcgtgtaaca
     1381 cctacatgga cagcctagac attgtcacca gcaaggtgtc aagcctcttt cgggaacagc
     1441 agtcgctgct ggactgcatc ctctgctttg tggattacat agacttcttt aataccaaag
     1501 gcttgaagaa cttgcccaca cctcctccca aattaaagag agctcggccg gcaagcatgc
     1561 cactgaagtc caagaaggct tttggaatct gtggagagag ccttaccagc ctccctgcag
     1621 aagagaccaa gccagacgca cagcaggtac aggtacagca gcagtcacaa gtgccgccct
     1681 cgcaggttgg catgctggac accttgcacc agagtggctc tgaactagcc tacaagctgt
     1741 gccacaatga gtgggaggtg gtacagaact ccacccacct ggtggacatg gctggctctt
     1801 cagtggacgt tcagctgcta gaggactctc accaggttag caaagatggc tgtagctgca
     1861 gctgttcctt tcaacaatgg taccacctgc catgccgaca cattttggct ctgctgcaca
     1921 ccagccagca gccggttggt gaagccatgg tgtgccgccg gtggcagaag aagtaccagt
     1981 acctccttgg gcccaatggg gagctccagg atcgtggtat ggtcccaaac acaggccagc
     2041 ctgagaagca aggacggaac gacatgattc aggacctaag cagggagtta gcaaacctgc
     2101 tcatgcagac cgaggggcca gagctggagg aacgctactc caccctgcgc aagattgtgg
     2161 atatctgggc tggcccctcc cagccatctg agctctttca gcagccagga gactttaagg
     2221 acgtgggccg cctccctttc ctctggggaa agcaagaaga aggggaggga ttccctcctg
     2281 ctacagctgt gatgcattat tgaagcactt tagctgaagc attggaccac aaacacttct
     2341 ccttggaagt gtgagagttt aaagtgggca ggacatacta gggtttagca ttttagccaa
     2401 tgtcttccta ggtggggcta ggaatattgt tacagtagag aggaagggaa ctccactgtg
     2461 tgacagtcct ttcaatctgc cccttttcag ccctactttt ggcattcctt gggagcctca
     2521 gttgttgttc aaggccaaag ttatctccgt gctgcaaggt caccctcttc ctcccccagc
     2581 ccctgagatc agatcttatt tgctctgcaa agatgaatcc ctgcctcagg ttagggtgag
     2641 acaaaatcgg tctggtaaaa gggcctgttt tcagggacaa agggaatgag gatgatcttt
     2701 ggctgttgct gctctttatg aagaatctta tttgtaactt tttattcata ttaaagttgt
     2761 ttttaataaa attaaa
//
