LOCUS       NM_001358413            1929 bp    mRNA    linear   PRI 08-APR-2024
DEFINITION  Homo sapiens zinc finger and SCAN domain containing 5C (ZSCAN5C),
            mRNA.
ACCESSION   NM_001358413
VERSION     NM_001358413.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Sun,Y., Zhang,H., Kazemian,M., Troy,J.M., Seward,C., Lu,X. and
            Stubbs,L.
  TITLE     ZSCAN5B and primate-specific paralogs bind RNA polymerase III genes
            and extra-TFIIIC (ETC) sites to modulate mitotic progression
  JOURNAL   Oncotarget 7 (45), 72571-72592 (2016)
   PUBMED   27732952
REFERENCE   2  (bases 1 to 1929)
  AUTHORS   Grimwood,J., Gordon,L.A., Olsen,A., Terry,A., Schmutz,J.,
            Lamerdin,J., Hellsten,U., Goodstein,D., Couronne,O.,
            Tran-Gyamfi,M., Aerts,A., Altherr,M., Ashworth,L., Bajorek,E.,
            Black,S., Branscomb,E., Caenepeel,S., Carrano,A., Caoile,C.,
            Chan,Y.M., Christensen,M., Cleland,C.A., Copeland,A., Dalin,E.,
            Dehal,P., Denys,M., Detter,J.C., Escobar,J., Flowers,D.,
            Fotopulos,D., Garcia,C., Georgescu,A.M., Glavina,T., Gomez,M.,
            Gonzales,E., Groza,M., Hammon,N., Hawkins,T., Haydu,L., Ho,I.,
            Huang,W., Israni,S., Jett,J., Kadner,K., Kimball,H., Kobayashi,A.,
            Larionov,V., Leem,S.H., Lopez,F., Lou,Y., Lowry,S., Malfatti,S.,
            Martinez,D., McCready,P., Medina,C., Morgan,J., Nelson,K.,
            Nolan,M., Ovcharenko,I., Pitluck,S., Pollard,M., Popkie,A.P.,
            Predki,P., Quan,G., Ramirez,L., Rash,S., Retterer,J., Rodriguez,A.,
            Rogers,S., Salamov,A., Salazar,A., She,X., Smith,D., Slezak,T.,
            Solovyev,V., Thayer,N., Tice,H., Tsai,M., Ustaszewska,A., Vo,N.,
            Wagner,M., Wheeler,J., Wu,K., Xie,G., Yang,J., Dubchak,I.,
            Furey,T.S., DeJong,P., Dickson,M., Gordon,D., Eichler,E.E.,
            Pennacchio,L.A., Richardson,P., Stubbs,L., Rokhsar,D.S.,
            Myers,R.M., Rubin,E.M. and Lucas,S.M.
  TITLE     The DNA sequence and biology of human chromosome 19
  JOURNAL   Nature 428 (6982), 529-535 (2004)
   PUBMED   15057824
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC011506.3.
            
            On Jun 8, 2021 this sequence version replaced NM_001358413.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA2148874 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000534327.7/ ENSP00000435234.1
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                AC011506.3         19876-19925
            51-561              AC011506.3         23390-23900
            562-765             AC011506.3         24662-24865
            766-916             AC011506.3         25637-25787
            917-1929            AC011506.3         26052-27064
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19q13.43"
     gene            1..1929
                     /gene="ZSCAN5C"
                     /gene_synonym="ZNF495C; ZSCAN5CP"
                     /note="zinc finger and SCAN domain containing 5C"
                     /db_xref="GeneID:649137"
                     /db_xref="HGNC:HGNC:34294"
     exon            1..50
                     /gene="ZSCAN5C"
                     /gene_synonym="ZNF495C; ZSCAN5CP"
                     /inference="alignment:Splign:2.1.0"
     exon            51..561
                     /gene="ZSCAN5C"
                     /gene_synonym="ZNF495C; ZSCAN5CP"
                     /inference="alignment:Splign:2.1.0"
     CDS             178..1668
                     /gene="ZSCAN5C"
                     /gene_synonym="ZNF495C; ZSCAN5CP"
                     /note="zinc finger and SCAN domain containing 5C,
                     pseudogene; zinc finger and SCAN domain-containing protein
                     5-like protein 2; zinc finger and SCAN domain-containing
                     protein 5C pseudogene; putative zinc finger and SCAN
                     domain-containing protein 5C"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     5C"
                     /protein_id="NP_001345342.1"
                     /db_xref="CCDS:CCDS86811.1"
                     /db_xref="GeneID:649137"
                     /db_xref="HGNC:HGNC:34294"
                     /translation="MAANCTSSWSLGESCNSPGSEPPQSMPSPATQLGNHDSDPETCH
                     VNFRMFSCPKESDPIQALRKLTELCHLWLRPDLHTKEQILDMLVMEQFMISMPQELQV
                     LVMMNGVQSCKDLEDLLRNNRRPKKWSVVSFLGKEYLMQESDVEMAEAPASVRDDPRH
                     VSSQRTSSVNQMCPEEGQASQELQTLPRVPALFRRQEEDFLLPETTVMKGDPKALRPK
                     PTLEKDLEEDREENPGLTSPEPQLPNSPTGVVGAKEGKEPQKRASVENVDADTPSACV
                     VEREASTHSGSRGDALNLRGLKRSKPDATSISQEEPQGEATPVGNRESPGQAEINPVH
                     SPGPAGPVSHPSGQEVKELLPFACEVCGKRFKYRGKLAVHTRSHTGERLFQCNLCGKR
                     FMQRIGLQFHQRTHTGERPYTCDICQKQFTQKSYLKCHKRSHTGEKPFECKDCKKVFT
                     YKANLKEHQRIHSGEKPHKCSKCPRAFGRPATLRRHQKTHREATSQ"
     exon            562..765
                     /gene="ZSCAN5C"
                     /gene_synonym="ZNF495C; ZSCAN5CP"
                     /inference="alignment:Splign:2.1.0"
     exon            766..916
                     /gene="ZSCAN5C"
                     /gene_synonym="ZNF495C; ZSCAN5CP"
                     /inference="alignment:Splign:2.1.0"
     exon            917..1929
                     /gene="ZSCAN5C"
                     /gene_synonym="ZNF495C; ZSCAN5CP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagagcacat cctagaagag aggaggctgg aggcagaagt caggaaggag acttctgaat
       61 gaacagtgaa tctattactg agaaaaacca ggggtggcct gtgtatatag gtcgcaatta
      121 gacaccggct tctggaagag ctttcccaga gacagattga aatattcccc agtagacatg
      181 gctgcaaatt gcacatcctc atggagtcta ggagaatcct gcaacagccc tgggtcagag
      241 ccaccacagt ccatgccatc cccagcaact caacttggaa atcatgacag tgatcctgag
      301 acttgtcacg tgaacttcag gatgttcagc tgcccgaagg agtcggaccc catccaggct
      361 ctgaggaaac tcactgagct gtgccatctg tggctgaggc ccgacctcca caccaaagag
      421 cagatcctgg acatgctggt gatggagcag ttcatgatct ccatgcccca ggagctccag
      481 gtcttagtca tgatgaacgg tgtgcagagc tgcaaagacc tggaggacct gctacgaaat
      541 aacagaagac ccaagaaatg gtctgtagtc agttttcttg gcaaggaata tcttatgcag
      601 gaatcagatg tggagatggc tgaagccccc gccagtgtca gagatgatcc gagacacgtg
      661 tccagccagc ggacctcctc tgtgaaccag atgtgtccgg aggaaggcca ggccagccaa
      721 gagctgcaga ccctgcccag ggtccctgca ctgttcagga ggcaggaaga ggacttcctg
      781 ctgccagaga ctactgtcat gaaaggtgac ccaaaggctc tgagacccaa gccgaccttg
      841 gagaaggacc tggaggaaga cagggaggag aacccaggac ttacatcccc agagcctcag
      901 cttccaaaca gtcccacagg ggtggtggga gcaaaggagg ggaaggaacc ccaaaaaaga
      961 gcctctgtgg aaaatgtgga tgctgacaca ccttctgcct gcgttgtgga gagagaagct
     1021 tcgactcaca gcgggagcag aggagacgct ctgaatctga gaggtctcaa aagaagcaaa
     1081 ccagacgcca cctccatttc ccaagaagag cctcaaggag aagccacacc tgtgggcaac
     1141 agagaatccc cgggacaagc tgagatcaat ccagttcatt ccccaggccc tgcgggccca
     1201 gtcagtcacc ccagtggcca agaagtcaag gaactgctgc cctttgcatg tgaggtgtgc
     1261 ggcaagaggt ttaagtatcg cggcaagtta gccgtccaca cgagatcaca cacaggcgag
     1321 agactctttc agtgtaatct ctgcgggaag cgcttcatgc agcgcatagg cctgcaattt
     1381 caccagcgaa cccacactgg cgagaggccc tacacgtgtg acatctgcca gaagcagttc
     1441 acccagaagt cctacttgaa gtgtcacaag agaagccaca caggggagaa gcccttcgaa
     1501 tgtaaagact gcaagaaagt tttcacctac aaggcaaatc tgaaggagca ccagcgcatc
     1561 cactctggag agaaacccca caaatgttcc aagtgtccaa gagccttcgg tcggccggcg
     1621 accttaagac gccaccagaa aacacatcga gaagccactt cacagtgact tcaccatcgg
     1681 gtctgtcttc tgcaccaaga aagtgtgaat gaagattttt caccgatgtt gtcagatgac
     1741 gtttgacaga tgaagggcgc ctggcacgca gaggagtgcc ctagatagga attcctagga
     1801 tgtttgttta aatctttttc ctccccgggg gaattttggt ttttgtttca ttatttctat
     1861 tgttttaggt ttattttggt ttgtgttgct gttctttcaa taaacatctt attagttttc
     1921 aatattttg
//
