LOCUS       NM_001112734            4122 bp    mRNA    linear   PRI 04-APR-2024
DEFINITION  Homo sapiens zinc finger and SCAN domain containing 30 (ZSCAN30),
            transcript variant 2, mRNA.
ACCESSION   NM_001112734 XM_001720071 XM_001722380 XM_001723235
VERSION     NM_001112734.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4122)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   2  (bases 1 to 4122)
  AUTHORS   Wu,Y., Yu,L., Bi,G., Luo,K., Zhou,G. and Zhao,S.
  TITLE     Identification and characterization of two novel human SCAN
            domain-containing zinc finger genes ZNF396 and ZNF397
  JOURNAL   Gene 310, 193-201 (2003)
   PUBMED   12801647
REFERENCE   3  (bases 1 to 4122)
  AUTHORS   Wistow,G., Bernstein,S.L., Wyatt,M.K., Behal,A., Touchman,J.W.,
            Bouffard,G., Smith,D. and Peterson,K.
  TITLE     Expressed sequence tag analysis of adult human lens for the NEIBank
            Project: over 2000 non-redundant transcripts, novel genes and
            splice variants
  JOURNAL   Mol Vis 8, 171-184 (2002)
   PUBMED   12107413
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DC414102.1, AY234408.1, AL832180.1, AK001503.1 and AA988135.1.
            
            On Nov 23, 2018 this sequence version replaced NM_001112734.3.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1 and 2 encode the same isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1803615.35095.1,
                                           SRR1660805.181887.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000333206.10/ ENSP00000329738.4
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                DC414102.1         18-38
            22-2329             AY234408.1         1-2308
            2330-2759           AL832180.1         854-1283
            2760-3596           AK001503.1         1093-1929
            3597-4119           AL832180.1         2121-2643
            4120-4122           AA988135.1         8-10                c
FEATURES             Location/Qualifiers
     source          1..4122
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="18"
                     /map="18q12.2"
     gene            1..4122
                     /gene="ZSCAN30"
                     /gene_synonym="ZNF-WYM; ZNF397OS; ZNF917"
                     /note="zinc finger and SCAN domain containing 30"
                     /db_xref="GeneID:100101467"
                     /db_xref="HGNC:HGNC:33517"
     exon            1..146
                     /gene="ZSCAN30"
                     /gene_synonym="ZNF-WYM; ZNF397OS; ZNF917"
                     /inference="alignment:Splign:2.1.0"
     exon            147..657
                     /gene="ZSCAN30"
                     /gene_synonym="ZNF-WYM; ZNF397OS; ZNF917"
                     /inference="alignment:Splign:2.1.0"
     CDS             250..1734
                     /gene="ZSCAN30"
                     /gene_synonym="ZNF-WYM; ZNF397OS; ZNF917"
                     /note="isoform 1 is encoded by transcript variant 2; zinc
                     finger protein 397 opposite strand; ZNF397 opposite
                     strand; zinc finger and SCAN domain-containing protein 30;
                     zinc finger protein 397OS"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     30 isoform 1"
                     /protein_id="NP_001106205.1"
                     /db_xref="CCDS:CCDS42427.1"
                     /db_xref="GeneID:100101467"
                     /db_xref="HGNC:HGNC:33517"
                     /translation="MSGEATVLAYHAPEEQEGLLVVKVEEENYVLDQDFGLQENPWSQ
                     EVFRQKFRQFSYSDSTGPREALSRLRELCCQWLRPEVHSKEQILELLMLEQFLAILPE
                     ELQAWLREHRPENGEEAVTMLEELEKELEEPRQQDTTHGQEMFWQEMTSTGALKSLSL
                     NSPVQPLENQCKTETQESQAFQERDGRMVAGKVLMAKQEIVECVASAAMISPGKLPGE
                     THSQRIAEEALGGLDNSKKQKGNAAGNKISQLPSQDRHFSLATFNRRIPTEHSVLESH
                     ESEGSFSMNSNDITQQSVDTREKLYECFDCGKAFCQSSKLIRHQRIHTGERPYACKEC
                     GKAFSLSSDLVRHQRIHSGEKPYECCECGKAFRGSSELIRHRRIHTGEKPYECGECGK
                     AFSRSSALIQHKKIHTGDKSYECIACGKAFGRSSILIEHQRIHTGEKPYECNECGKSF
                     NQSSALTQHQRIHTGEKPYECSECRKTFRHRSGLMQHQRTHTRV"
     exon            658..802
                     /gene="ZSCAN30"
                     /gene_synonym="ZNF-WYM; ZNF397OS; ZNF917"
                     /inference="alignment:Splign:2.1.0"
     exon            803..4122
                     /gene="ZSCAN30"
                     /gene_synonym="ZNF-WYM; ZNF397OS; ZNF917"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4102..4107
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZSCAN30"
                     /gene_synonym="ZNF-WYM; ZNF397OS; ZNF917"
                     /note="hexamer: AATAAA"
     polyA_site      4122
                     /gene="ZSCAN30"
                     /gene_synonym="ZNF-WYM; ZNF397OS; ZNF917"
                     /note="major polyA site"
ORIGIN      
        1 aacccccgaa ccgccgcgag ctgtccctag cagtgcctta gccagggacc tgcttggcca
       61 gcgacagatc ctttgctgct ctgtctgccg gttcttgagg tgaatgtcgg aatccattat
      121 ctttcgggaa agctctctgg ggcagggagc gtcctgggga gttggaattc agaaggaatc
      181 tctcagacgc aaatctccat ctcctccctg cctcacctgg gcagcctttt cagactgtct
      241 ctgcccagaa tgtcaggaga ggccacagtc ttggcctacc atgctccaga agaacaggaa
      301 ggacttctag ttgtcaaggt tgaagaagaa aattatgttt tggaccagga ctttggcctt
      361 caggaaaacc cctggagcca agaggtattc cggcagaagt tcaggcagtt tagttactct
      421 gactccactg gccctcggga ggctctgagc cggctgcgag agctttgctg tcagtggttg
      481 aggccggagg tgcactccaa ggagcagatc ctggagctgc tgatgttgga gcagttcctg
      541 gccatccttc ctgaggagct gcaagcttgg ctgcgagagc atcggccaga gaatggagag
      601 gaagctgtga ctatgctgga ggagctggaa aaagaactgg aggagccaag gcaacaggac
      661 acaactcatg gccaagaaat gttctggcag gaaatgacat ccacaggagc actgaagtct
      721 ctgtctctga atagcccggt gcagccctta gagaaccagt gcaagactga gactcaggag
      781 tcccaggctt tccaggagag agatggcagg atggtggctg gcaaagtgtt gatggcaaag
      841 caagaaattg ttgaatgtgt agcctcagca gctatgatat cgccgggaaa acttcctgga
      901 gaaacacatt cccaacggat agctgaagaa gctttgggag gtctggacaa ctctaagaag
      961 caaaagggaa atgctgcagg gaacaaaatc agtcagcttc cttcccagga cagacatttc
     1021 agtctggcaa ccttcaacag aagaatcccc acagaacaca gtgtccttga atctcatgag
     1081 agtgaaggaa gtttcagtat gaattcaaat gatattacac aacagagcgt tgacactagg
     1141 gaaaagctct atgagtgctt tgactgtggg aaggcctttt gccagagctc aaagctgatt
     1201 agacatcaga gaattcatac tggagagaga ccttatgcat gtaaagaatg tggcaaagcc
     1261 ttcagtttga gctcagacct tgttagacat cagagaattc atagtggtga aaaaccctat
     1321 gaatgttgtg aatgtggaaa agccttcagg ggcagttcag agctcatcag gcatcggaga
     1381 atccacactg gagagaagcc ttatgaatgt ggagaatgtg ggaaggcctt cagccggagc
     1441 tcagccctta ttcagcataa gaaaattcac actggagata aaagctatga atgtattgca
     1501 tgtggtaagg cttttggtag gagttctatc cttattgaac atcaaagaat tcacactgga
     1561 gagaaacctt atgaatgtaa tgaatgtgga aaatccttca atcagagctc agccctcacc
     1621 cagcaccaga gaattcacac tggagagaag ccttatgaat gtagtgaatg tagaaaaaca
     1681 tttaggcata ggtcaggcct tatgcagcat cagagaacac acaccagagt ttaactctgt
     1741 gggtaagagt tgtacaattg tgaaatgcaa ggagttcact gtaggggtga gactccacag
     1801 aaaagaaaag tttcctgaga gcagaacttc tgtccttccc tcccagttcg gtactataag
     1861 aagacatgca cacaaagatg tttgttatga ttattgaagt gttaaatgga agaaaaatgt
     1921 tacccaagtc ttctccaaaa agaatggtag atatttcctt gaaatgccta acccatttct
     1981 ggatgagact catcaatatc cccttcactc cactctctgc caactcagat ataatttcca
     2041 ttgggcacct tcacagtaat gccaggattg gggcagagat cctgaaagag cttcttataa
     2101 gatggcaaat gtgcctggca agagcatttg tattttgtca ggtggaggca tgtgctgaga
     2161 gttattcaac tatctgaaat gttgaatttg gaggttgtga aaatattgaa ttatgctatt
     2221 agtttaataa tatctgaggc agtaaaatag tacctgagga atggtgcctc attctgcccc
     2281 cttgccagtt gtctcctcaa tcctgagctt cctgctgagg ttaattcaag tctactagtt
     2341 tattgagcac ctgctatgtg ctaggcattg aggtagacct ggtcattgcc ctcccagagt
     2401 taagggctaa taggatatgc atatatacta aacagtaatt acagtaaagt gtggtaagtg
     2461 ctttggtagg aaaaatgcgg gtttccatca aagtacatgg cagggatacc taaatctggt
     2521 ctatgagtca ctaaagactt cctggatatg atggtatctc agacataaag gtgggtagaa
     2581 ggtagcaagg gcaggggaga agagaacagg atctggagac actccatgaa gactcttctc
     2641 tactgcagaa attgtcatag acctaatttt taaaaaaatg aatctgaagg agtaattcaa
     2701 caaatattta ttgccctcaa gtataatagc tcagggcctg caagcctggt aaggaggggt
     2761 gtgggcaggg aatggggaat agcagagcct gggaaggcag atcaccgtgt tcctttatac
     2821 ttcccactgc ctgagtccca gagtcatggg acacaaacac tccagtcccc actgtctctc
     2881 tagcctctga tatgcattct ttccctgtgt atatacatgc cttttcccat aaaatgcacc
     2941 agtctctcac cacactaatt ctgagtactt cagagtctca caggtcattc tgggtctaga
     3001 ataggctccc caactcagtg attataagta ggaagaggaa aagcaacaca tggggattct
     3061 gagccaggct ttatgacaac taattcctgc tggagagaag agtcctgatg atgggctgtc
     3121 tccagatcct atcttatctt catgccattg tatgggctat aacctctgcc tgtaactctc
     3181 tctgctaatt tttattttgg cagttttaat taacccacaa ttgctgaggg caattaatac
     3241 ctaaaagaaa gtttgattcc tcttctaaga tatcctaggt agtgtcattt ctaaagaaga
     3301 cttggtgatc actgcttgta ttagtccatt ttcacagtgc tatgaagata ctacctgata
     3361 ctgggtaatt tattaaaaaa aaaaaagagg tttaattgac tgacagttct gcagggctgg
     3421 ggaggcctca ggaaacttaa atcatggtgg aaggcgaagg ggaagcaagc accttcttca
     3481 caaggtggca agagagagtg caggggaaat gctaggcact tatcaatcag ccaaatctca
     3541 tgagaattca ctatcatgag aacaaggggg aaatctgctc ccatgatcta atcacctccc
     3601 accacgaccc tccctcaaca cctggggatt actattggag atttgggtgg ggacacaaga
     3661 gccaaaccat atcactgctg ttgtgggtaa taggggaggt gaaattgggg ggacaattcg
     3721 gcctctttgt gtccagaggt tgtgcagtta tcgagtgagg tcgatcagaa gtctaaaggg
     3781 atctttcaaa tggatagtga gttgcctttt cctataggtg acaatcagag atttaatgtt
     3841 ttaagtatca tataataggt ttttctcctg attgtgaatt gtaagtgttg gtaatacaga
     3901 aaatgagaaa gtataaacca cccccaatcc caatgcccat agaaacgttg ttaacatttt
     3961 ggagtacttt ctattagtgt ttatttttcc caatcctagt atttttagta aaactactgt
     4021 ttagtaaatg atttttggta actaatttca aaatttatac ttcaaccgtt tattattaga
     4081 atgtaatgca agatgtattg caataaaact tgagttttaa aa
//
