LOCUS       NM_001372080            6055 bp    mRNA    linear   PRI 21-SEP-2024
DEFINITION  Homo sapiens zinc finger and SCAN domain containing 29 (ZSCAN29),
            transcript variant 1, mRNA.
ACCESSION   NM_001372080 XM_011521266
VERSION     NM_001372080.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 6055)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   2  (bases 1 to 6055)
  AUTHORS   Yin,Y., Morgunova,E., Jolma,A., Kaasinen,E., Sahu,B.,
            Khund-Sayeed,S., Das,P.K., Kivioja,T., Dave,K., Zhong,F.,
            Nitta,K.R., Taipale,M., Popov,A., Ginno,P.A., Domcke,S., Yan,J.,
            Schubeler,D., Vinson,C. and Taipale,J.
  TITLE     Impact of cytosine methylation on DNA binding specificities of
            human transcription factors
  JOURNAL   Science 356 (6337) (2017)
   PUBMED   28473536
REFERENCE   3  (bases 1 to 6055)
  AUTHORS   Dgany,O., Avidan,N., Delaunay,J., Krasnov,T., Shalmon,L.,
            Shalev,H., Eidelitz-Markus,T., Kapelushnik,J., Cattan,D.,
            Pariente,A., Tulliez,M., Cretien,A., Schischmanoff,P.O.,
            Iolascon,A., Fibach,E., Koren,A., Rossler,J., Le Merrer,M.,
            Yaniv,I., Zaizov,R., Ben-Asher,E., Olender,T., Lancet,D.,
            Beckmann,J.S. and Tamary,H.
  TITLE     Congenital dyserythropoietic anemia type I is caused by mutations
            in codanin-1
  JOURNAL   Am J Hum Genet 71 (6), 1467-1474 (2002)
   PUBMED   12434312
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC018924.9.
            
            On Aug 8, 2019 this sequence version replaced XM_011521266.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 both encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14038192.4206951.1,
                                           SRR14038195.2357538.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000684362.1/ ENSP00000507363.1
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-486               AC018924.9         40891-41376         c
            487-916             AC018924.9         39929-40358         c
            917-1121            AC018924.9         39256-39460         c
            1122-1820           AC018924.9         36443-37141         c
            1821-2288           AC018924.9         34248-34715         c
            2289-6055           AC018924.9         28508-32274         c
FEATURES             Location/Qualifiers
     source          1..6055
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="15"
                     /map="15q15.3"
     gene            1..6055
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /note="zinc finger and SCAN domain containing 29"
                     /db_xref="GeneID:146050"
                     /db_xref="HGNC:HGNC:26673"
                     /db_xref="MIM:620932"
     exon            1..486
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /inference="alignment:Splign:2.1.0"
     exon            487..916
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /inference="alignment:Splign:2.1.0"
     CDS             599..3157
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /note="zinc finger protein 690; KOX31-like zinc finger
                     protein"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     29"
                     /protein_id="NP_001359009.1"
                     /db_xref="CCDS:CCDS10095.2"
                     /db_xref="GeneID:146050"
                     /db_xref="HGNC:HGNC:26673"
                     /db_xref="MIM:620932"
                     /translation="MMAKSALRENGTNSETFRQRFRRFHYQEVAGPREAFSQLWELCC
                     RWLRPEVRTKEQIVELLVLEQFLTVLPGEIQNWVQEQCPENGEEAVTLVEDLEREPGR
                     PRSSVTVSVKGQEVRLEKMTPPKSSQELLSVRQESVEPQPRGVPKKERARSPDLGPQE
                     QMNPKEKLKPFQRSGLPFPKSGVVSRLEQGEPWIPDLLGSKEKELPSGSHIGDRRVHA
                     DLLPSKKDRRSWVEQDHWSFEDEKVAGVHWGYEETRTLLAILSQTEFYEALRNCHRNS
                     QVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEALMSAQ
                     VIALPSNGLEAAASHSGLVGSDAETEEPGQRGWQHEEGAEEAVAQESDSDDMDLEATP
                     QDPNSAAPVVFRSPGGVHWGYEETKTYLAILSETQFYEALRNCHRNSQLYGAVAERLW
                     EYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDALVSVRVAAPPNDGQEE
                     TASCPVQGTSEAEAQKQAEEADEATEEDSDDDEEDTEIPPGAVITRAPVLFQSPRGFE
                     AGFENEDNSKRDISEEVQLHRTLLARSERKIPRYLHQGKGNESDCRSGRQWAKTSGEK
                     RGKLTLPEKSLSEVLSQQRPCLGERPYKYLKYSKSFGPNSLLMHQVSHQVENPYKCAD
                     CGKSFSRSARLIRHRRIHTGEKPYKCLDCGKSFRDSSNFITHRRIHTGEKPYQCGECG
                     KCFNQSSSLIIHQRTHTGEKPYQCEECGKSFNNSSHFSAHRRIHTGERPHVCPDCGKS
                     FSKSSDLRAHHRTHTGEKPYGCHDCGKCFSKSSALNKHGEIHAREKLLTQSAPK"
     exon            917..1121
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..1820
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /inference="alignment:Splign:2.1.0"
     exon            1821..2288
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /inference="alignment:Splign:2.1.0"
     exon            2289..6055
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /inference="alignment:Splign:2.1.0"
     regulatory      6035..6040
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /note="hexamer: AATAAA"
     polyA_site      6055
                     /gene="ZSCAN29"
                     /gene_synonym="Zfp690; ZNF690"
                     /note="major polyA site"
ORIGIN      
        1 acttccggtt tgggagctgt acttgggagg ctggagagcc ggggccgggg ccggggccgg
       61 ggccggggtc agggtcggac cccgagtggg tgaggctggc ccggaggcaa ggatgcgagg
      121 gggttgaggg gcagctcgag agggagacgc tcccaggggt gggctggagg gcgccctcag
      181 ggcgccttag ccgggtcaga ggcctctgga gggaccgcac gacggctccg ggttacccgg
      241 ccggagggag cggagacaaa agaggccaga atcccgcagc cgctgctcct tgggctgaga
      301 gctctgcgtc cgcgaaccgg cagcacctgg agcctctggc cgacacccga gcccgtcctc
      361 aggaagcccg ttactactgc tcctcggatt ccgtctctcc tgcccaatgt gactctcccc
      421 aagcccccat ggtcctcgct ttggagccaa aaccagcttc tctccttgcg cgaggttttc
      481 cgacaggaag aaacacctct tacagtcatc tgcaggggat tctccaagga catgggaaga
      541 tagatgtaag ccctggaacc cagactccta agcgaaggga agctgcattc tgctattaat
      601 gatggccaaa tcagctctaa gagagaatgg cactaactct gagaccttcc gacagcgttt
      661 caggagattc cattaccagg aggtggctgg gccgcgggag gctttcagcc aactctggga
      721 actttgctgt cggtggctaa ggccggaggt gcgcaccaag gagcagattg tagaactgtt
      781 ggtgctagag cagttcctga ccgtcttacc tggggagatc cagaattggg tacaggaaca
      841 atgtccagaa aatggagagg aggcagtgac tctcgtggaa gatttagaaa gagagcctgg
      901 aagacctaga tcttcggtca cagtctctgt gaaggggcag gaagtgcgct tggagaagat
      961 gacacccccg aaatcatcac aagagttatt aagtgttcgg caggagtcag tggaacccca
     1021 gcccaggggt gtacccaaga aagagagggc aagaagccca gacctgggac cacaggagca
     1081 gatgaaccca aaggagaagc tcaaaccttt tcaaaggagc ggattgccat ttcctaaatc
     1141 cggtgtggtc tccaggttgg agcaaggaga gccatggatc ccagatctgc tgggctctaa
     1201 ggagaaagaa cttccaagtg gcagccacat aggagacaga cgagtgcatg ctgatctgtt
     1261 accatccaag aaagatagaa gaagctgggt ggaacaggat cactggagct ttgaagatga
     1321 gaaggtggca ggtgtgcact ggggctatga agagaccaga acgctcctcg caattctcag
     1381 ccagactgag ttttatgagg ctctcagaaa ctgccatagg aacagccaag tgtatggggc
     1441 tgtggctgag cggctcaggg aatatggctt cctccggacc ctggaacagt gtcggaccaa
     1501 gttcaaaggt ctccagaaga gctatcggaa agtcaagagc ggccacccac ctgagacctg
     1561 ccccttcttt gaagagatgg aagccctgat gagtgctcag gtcattgccc tgcccagtaa
     1621 tggcctggaa gcagcagcct ctcactctgg cctggtaggc agcgatgctg agactgaaga
     1681 gccagggcag aggggctggc agcatgagga gggagcagaa gaggctgtgg ctcaggagtc
     1741 tgacagtgat gacatggatc tagaggcgac cccccaggac cccaactcag ctgcacctgt
     1801 tgtgttcaga agcccaggtg gtgtacactg gggctatgaa gagaccaaga cttaccttgc
     1861 aattcttagt gagacccagt tttatgaagc cctccggaac tgtcaccgca acagccagct
     1921 gtatggagca gtggctgaga ggttatggga atatggcttt cttaggaccc cagaacagtg
     1981 tcggaccaag tttaaaagcc tgcaaaccag ctatcggaaa gttaagaatg gccaggcacc
     2041 agagacctgt cccttctttg aagagatgga tgctttggtg agtgtccggg ttgctgcccc
     2101 acccaatgat ggccaggaag agactgcttc ttgccccgtc caggggacca gtgaggctga
     2161 agctcagaag caagctgagg aagcagacga ggccacagag gaagattctg atgatgatga
     2221 agaggatact gagatacccc caggggctgt cataacccgt gctccagtgt tattccaaag
     2281 cccccgtggt tttgaagctg gatttgagaa tgaagataat tcaaaacggg atatttctga
     2341 ggaagtacaa ctgcatagga cattacttgc aagatctgaa aggaaaattc cccggtatct
     2401 tcatcagggt aaaggcaatg agagtgactg tagatcagga agacagtggg caaagacctc
     2461 aggggagaaa agaggaaaac tgacactccc ggagaagagc ttaagtgaag tcctaagtca
     2521 acagagacct tgcttgggag agagacccta taaatatctc aaatacagca aaagctttgg
     2581 tccaaactcc cttctcatgc atcaggtatc ccaccaggtg gaaaatccat ataaatgtgc
     2641 tgattgtggg aaaagcttca gtcggagtgc acgactcatt agacaccgga gaatccacac
     2701 tggagagaaa ccttataaat gtcttgactg tggaaaaagt ttccgtgaca gttcaaattt
     2761 catcacccat aggagaatcc acacaggaga gaaaccttat caatgtggtg agtgtgggaa
     2821 atgcttcaat cagagctcaa gccttatcat tcaccagaga acccacacag gagaaaagcc
     2881 ctatcaatgt gaagagtgtg gaaaaagctt caataacagt tctcatttta gtgcacatcg
     2941 gaggatacac acaggagaga gaccccatgt gtgtcctgac tgtggaaaga gtttcagtaa
     3001 gagttctgac ttacgtgcac atcatagaac ccacacagga gagaaaccct atgggtgtca
     3061 tgactgtggt aagtgcttca gtaaaagctc tgcccttaat aagcacggag aaatccatgc
     3121 acgggaaaag cttctgacac agtcagctcc caagtaagcc cctgaggata tataacggaa
     3181 agaggctcaa taaatgtatt gtttagaaag tcttccaata gtgagattca tctactattc
     3241 tgtgtccagt tagcttagga aattcacttt aggatttatg ccactgtttg ttccttgttt
     3301 ttcctgatct agactcaaat ccccaaggca gtctaaagaa tgaaaggaag atttcagtcc
     3361 ctctctttgc ctgcatctga attgatggat aacatctttt ccctctcagt gcctatggtg
     3421 ttcccttaat ataagcacag aggacaaggt aatagatcct atgaatttga taagcatcct
     3481 tctttactca ttctgtcatt cagctgcatt ttgacaggaa aaacccatta catttcgaga
     3541 agaagttatg agactttgcc cattaggtgg gtctagctct tttttttttt tttggagacg
     3601 gagttttgct cttgttgccc aggctggagt gcaatggcac gatctcagct cactgcaacc
     3661 tctgcttccc gggttcaagt gattctcctg cctcagcctc ccaagtggct ggaattacaa
     3721 gcatgcgcca ccatgcccag ctaattttat atttttagta gagatggggt ttctccatgt
     3781 tgggcaggct ggtctcaaac tcccgacctc aggtgatctg cctgcctcgg cctcccaaag
     3841 tgctgggatt acaggcatga gccactgcgc cgggcttttt tttttcgaga tggagtctca
     3901 ctctgtcgtc caggctggag tgcagtggca tgatctcagc tcactgcaac ctctgccttc
     3961 tgggttcaaa caattttcct gcctcagcct cctgagtagc tgggattaca gccacctgcc
     4021 accataccag gctaaatttt gcatttttag tagagatggg gtttcaccat gttggccagg
     4081 ctggttttga attgacctca tgatctgcct gcctaggtct cccaaagtgc tgggattaca
     4141 ggtgtgagcc actgcacccg gcccagctct tctttataca ataatggaaa tgctaaaatg
     4201 aatgactctt cctgctcact taaacctgtg ctcaaaatga catatttgtc aggcaccctc
     4261 ttcatttacc ttaaagaagg agagtttaat gtccatcttg gttctgccct atgaatcatc
     4321 ttgtcaagaa caggtgttct tatgcagaaa caatgaaaac cttatactga agtgtgaacc
     4381 ctggatttct tagtttcttc tgagtcctag aagaagggtt ggaatagaat aatacattta
     4441 caggatttag gttggttttc tttctgtcca gtctcatctg aatttcgtct gtctcttgtg
     4501 gtccagaagt tccacagagc aacgcagctg catgtggtga caggtagagc agttaaagct
     4561 gccaatagga actcgtccat attccacaca cctggtatag tgttatgccc tccatgggca
     4621 cttacctgca ataagcagaa gccactgcca cattcccgtg tattgggaaa atggactact
     4681 gtgtgcgaac aggcccttta ccctaatggc agggaagatg gattatcttt ggccagtgga
     4741 gctgccaatc tagacataca cattcaactg aatacaatta aaagcagttc tttaaatgca
     4801 aatataatta ctcatcttta taatacaata gtattaactg cccatatgct catagtatga
     4861 tgagccctgt atagcacaag gtcaacaggt cctctccttg tccttacaat ctaaagcaga
     4921 tgacactgac atggacaaac aagtgcacat gcatagttgc ggcagtttta gagaaatcta
     4981 gaaagctagg tagcaacact atgcataaat gttgtggtcc aatgcattag tttgctttaa
     5041 caaaaatctg ggaggtattt tttctcttta ttcaggaagg cttcatgaag caggaagtgg
     5101 tcaaaggagg gaaggttact ggttaaatta tgataggaag aactttccat aactagttgc
     5161 aaaattgagt gctgggtggg ttgaggaatg ggaaaaaggg ggagcaaggt gttttgtgta
     5221 gatggaacaa agggcaaagg atagactgta aggaaggcca gataaagctt ggagtagcat
     5281 gagaacttga ggaatagtat gatatgggct gtgcagcagg cagagagaat caccttagct
     5341 gaaacatggg tgttaggagc agaccatgag gtggtagaac catcatctat agtaaatcag
     5401 gtactacgct ataactattg ataaggaaac agctgactgc cactgaaaga ataagcagtt
     5461 ttaggggact agctcctatg ggagataaag gtcagaaatc gtagtatctg atgaagatat
     5521 tttgatgagc aggtgagaag aaagataaac atggccagat ggccaaggac tgggataagt
     5581 agccgtttca cattcaatta gaattctgtg gctggaataa gatcagggag agcagtagga
     5641 agatatagta ttctataatt catagcttgt tgtgttagag attaattagg attctgctgt
     5701 tgaatcttag tacaaaaaaa tctaatattt attaggaatt aagggaagat ggtacttctg
     5761 ttatgttgcc taagcagaca ggaagctaca agaaacacca gtctgaagca gtgcctcagg
     5821 atctcagatg atttaggaag tgtgctgtaa tgtcaaaaaa aaaaaaaagt attgtcttta
     5881 gtatatctat gtatagtctc gtgggaaaag cattggttgt ggtatcaaca gatattctgg
     5941 ttccagatgt cttgtaagtt aacctgcctc catttccctt tctgtaaagc aaaataatgt
     6001 ttacacctaa tctgtctctc agggatacca tattaataaa aatcatgtct ataaa
//
