LOCUS       NM_007138               3744 bp    mRNA    linear   PRI 04-APR-2024
DEFINITION  Homo sapiens zinc finger protein 90 (ZNF90), mRNA.
ACCESSION   NM_007138 XM_001714809 XM_001718859 XM_001719752
VERSION     NM_007138.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3744)
  AUTHORS   Bellefroid,E.J., Marine,J.C., Ried,T., Lecocq,P.J., Riviere,M.,
            Amemiya,C., Poncelet,D.A., Coulie,P.G., de Jong,P., Szpirer,C. et
            al.
  TITLE     Clustered organization of homologous KRAB zinc-finger genes with
            enhanced expression in human T lymphoid cells
  JOURNAL   EMBO J 12 (4), 1363-1374 (1993)
   PUBMED   8467795
REFERENCE   2  (bases 1 to 3744)
  AUTHORS   Bellefroid,E.J., Poncelet,D.A., Lecocq,P.J., Revelant,O. and
            Martial,J.A.
  TITLE     The evolutionarily conserved Kruppel-associated box domain defines
            a subfamily of eukaryotic multifingered proteins
  JOURNAL   Proc Natl Acad Sci U S A 88 (9), 3608-3612 (1991)
   PUBMED   2023909
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC006539.1, AC011447.7, CN386341.1 and BX102781.1.
            
            On Nov 22, 2018 this sequence version replaced NM_007138.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC137211.1, CN386341.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000418063.3/ ENSP00000410466.2
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-136               AC006539.1         106756-106891
            137-263             AC011447.7         24493-24619
            264-359             AC011447.7         25475-25570
            360-786             CN386341.1         293-719
            787-3736            AC011447.7         38462-41411
            3737-3744           BX102781.1         18-25               c
FEATURES             Location/Qualifiers
     source          1..3744
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19p12"
     gene            1..3744
                     /gene="ZNF90"
                     /gene_synonym="HTF9"
                     /note="zinc finger protein 90"
                     /db_xref="GeneID:7643"
                     /db_xref="HGNC:HGNC:13165"
                     /db_xref="MIM:603973"
     exon            1..136
                     /gene="ZNF90"
                     /gene_synonym="HTF9"
                     /inference="alignment:Splign:2.1.0"
     CDS             134..1939
                     /gene="ZNF90"
                     /gene_synonym="HTF9"
                     /note="zinc finger protein HTF9"
                     /codon_start=1
                     /product="zinc finger protein 90"
                     /protein_id="NP_009069.1"
                     /db_xref="CCDS:CCDS46028.1"
                     /db_xref="GeneID:7643"
                     /db_xref="HGNC:HGNC:13165"
                     /db_xref="MIM:603973"
                     /translation="MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLG
                     IVVTKPDLITCLEQGKKPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTR
                     YEKREYGNLELKKGCESVDEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNS
                     NRHKIRDTGKKPFKCIECGKAFNQSSTLATHKKIHTGEITCKCEECGKAFNRSSHLTS
                     HKRIHTGEKRYKCEDCGKELKYSSTLTAHKRIHTGEKRYKCEDCGKELKYSSTLTAHK
                     RIHTGEKPYKCDKCGRAFISSSILYVHKISHTEEKPYKCEECGKAFKLSSILSTHKRI
                     HTGEKPYKCEECGKAFRRSLVLRTHKRIHTGEKPYKCDKCGKAFISSSLLYKHKISHS
                     EKKPYKCEECGKAFKRSSTLTIHKISHTEEKPYKCQECDKVFKRSSALSTHKIIHSGE
                     KPYKCEECGKAFKRSSNLTTHKISHTEEKLYKCQECDKAFKYSSALSTHKIIHSGENP
                     YKCEECGKAFKRSSVLSKHKIIHTGAKPYKCEECGKAFKRSSQLTSHKISHTGEKPYK
                     CEECGKAFNLSSDLNTHKRIHIGQKAYIVKNMANL"
     exon            137..263
                     /gene="ZNF90"
                     /gene_synonym="HTF9"
                     /inference="alignment:Splign:2.1.0"
     exon            264..359
                     /gene="ZNF90"
                     /gene_synonym="HTF9"
                     /inference="alignment:Splign:2.1.0"
     exon            360..3744
                     /gene="ZNF90"
                     /gene_synonym="HTF9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3736..3741
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZNF90"
                     /gene_synonym="HTF9"
                     /note="hexamer: ATTAAA"
     polyA_site      3744
                     /gene="ZNF90"
                     /gene_synonym="HTF9"
                     /note="major polyA site"
ORIGIN      
        1 catttgtctc ttgctgcagc tggtgctcca aatctggtct tagctgcttc gtgtcttctt
       61 ctccagcctc tgtggccctg tgacctgcag gtattgggag atccacagct gagggacccc
      121 cggaagccta gaaatgggac cattggaatt tagagatgtg gccatagaat tctctctgga
      181 ggagtggcat tgcctggaca ctgcacagca gaatttatat agggatgtga tgttagagaa
      241 ctacagacac ctggtcttcc ttggtattgt tgtcactaag ccagacctga tcacctgtct
      301 ggagcaagga aaaaaaccct tcactgtgaa gagacatgag atgattgcca aatccccagt
      361 tatgtgtttt cattttgccc aagacctttg tccagagcag agcctaaaag attccttcca
      421 aaaagtgata gtgacaagat atgaaaaacg tgaatatggc aatttagagt taaaaaaagg
      481 ttgtgaaagt gtggatgagg gtaaagtaca caaaagaggt tataatggac ttaaccaatg
      541 tttgacagct acccagagca aagtatttca atgtgataca tatgtgaaag tctctcatat
      601 attttcaaat tcaaacagac ataagataag agatactgga aaaaaacctt tcaaatgtat
      661 agaatgtggc aaagctttca accagtcctc aacccttgct acacataaga aaattcatac
      721 tggagagata acctgcaaat gtgaagaatg tggcaaagcc ttcaacaggt cctcacacct
      781 tacttcacat aagagaattc atactggaga gaaacggtac aaatgtgaag attgtggcaa
      841 agaattaaag tattcctcta cccttactgc acataagaga attcatactg gagagaaacg
      901 gtacaaatgt gaagattgtg gcaaagaatt aaagtattcc tctaccctta ctgcacataa
      961 gagaattcat actggagaga aaccctacaa gtgtgataaa tgtggcagag catttatttc
     1021 atcctcgatc ctttatgtac ataagataag tcatactgaa gagaaaccct acaaatgtga
     1081 agaatgtggc aaagccttca agctctcctc aatccttagt acacataaga gaatccatac
     1141 tggagagaaa ccctacaaat gtgaagaatg tggcaaagcc ttcaggcgct ccttagtcct
     1201 tcgtacacat aagagaattc atactggaga gaaaccctac aagtgtgata aatgtggcaa
     1261 agcatttatt tcatcctcac tcctttataa acataagata agtcatagtg aaaagaaacc
     1321 ctacaaatgt gaagaatgtg gcaaagcctt caagcgctcc tcaacactta ctatacataa
     1381 gataagtcat actgaagaga aaccctacaa atgtcaagaa tgtgacaaag tcttcaaacg
     1441 ctcctcagcc cttagcacac ataagataat tcatagtgga gagaaaccct acaaatgtga
     1501 agaatgtggc aaagccttca agcgctcctc aaaccttact acacataaga taagtcatac
     1561 tgaagagaaa ctctacaaat gtcaagaatg tgacaaagcc ttcaagtact cctcagccct
     1621 tagcacacat aagataattc acagtggaga gaatccctac aaatgtgaag aatgtggcaa
     1681 agccttcaag cgctcctcag tccttagtaa acataagata attcatactg gagcgaaacc
     1741 ctacaaatgt gaagaatgtg gcaaagcctt taagcgctcc tcacagctta ctagtcataa
     1801 gataagtcat actggagaga aaccctacaa atgtgaagaa tgtggcaaag cttttaactt
     1861 gtcctcagac cttaatacac ataagaggat tcatattgga cagaaagcct acatagtgaa
     1921 gaacatggca aatctttgaa atattcctca acccttaata aacataagat aattcatact
     1981 ggagagaaac cgtataaatg tgatgactgt tggaaagcct ttgaccaccc ctctactctt
     2041 actaaatatg agaatttata tgaaacataa ctcctacaaa aataaagaat gtgacaaatc
     2101 attttaagga agttctcaac ccttactaca cataattcat actggacgga aactctacag
     2161 gtgtgaaaaa tgcagcaaag cctataacaa gttctcaatt cttttttttt ttttttaaga
     2221 aggagtttca tgcttctcac ccagcctgga gtgcaatggc acgatctctg ctcactgcaa
     2281 cctcttcctc ctggttcaag ccattaacct gcttcagcct ccaccaccat gcccaactaa
     2341 tttttgtatt tttggtagag acagggtttt gccatattta acaggctggt ctccaactgt
     2401 gattcacaca ccttggcctc ctaaaatgct gggattacag tcatgagcat ccatgcccag
     2461 ccacaagttc tcagttctta agagacatgg tgataattca tgctgaagag gaactttaca
     2521 aacttgaaag atgtgacagt gcttttacca ccacctccaa cttttctgta cataaagatg
     2581 attatactag tgtgaaaccc tagaaataat agaaaatttg acaaatcctt tatatggttg
     2641 caagacttga ttgtaggtaa gataattcat actggcaaaa ctcctacaag tgtgaagaat
     2701 gtgggaaaac tttttaatca gtgcatacac cttatttcac aggaaagcta gtatccttga
     2761 gaaaaattgc acaattataa aaaatatgga aaacccatta atgcctactc acatcttacc
     2821 caacagaagg tggttcacag ttaatgaaag catttaaagt gcaattatgc tcaagaaatc
     2881 tttcagaaaa tagaagcctt taaagtgaag aagagtattc tgaagacaac cattacacat
     2941 ataaaggggg ttgtattacc tttacttgca tcacagattt cattgcacac attttgtact
     3001 agaggaaaac cctgaagcag ttgctccagc tttgttcaac aacagggaat ttatgttaga
     3061 gaagaatcct gcaaatgtag tgaatttgga aacaaatttt ttttcaaaaa ctacagctta
     3121 gaaaacacca gagagttgat actaaaatat atgtttgcag aaacagtaaa tataaaaaat
     3181 atttaattca aaatgaattc catgtaaata tcagagaatt tacagtagaa taaggcactg
     3241 atacttcaga cattacacta aaacagtgtt gagtataaaa aagaatccac aacaaaaatt
     3301 gttagataaa ttatatatag ctttaaaagg ttttttgaag cattgtaatt acattgaaag
     3361 tatacttgct ttcttgagaa aaaatttttg aaaagtgaat aaggtaatag agctttcaaa
     3421 tttatgctgt tactttattt ctattcacat gtgaaagcat gtgatcaatt gatgctgcat
     3481 cagagatatt acagattctt tattgggcat tccttataac cttttctatt aaagagaaag
     3541 gatattaaaa tgtaagatgc atgatgaaaa tataagtgga caggctgttc gtatttgacc
     3601 tatattaagt aatgtataag gtagtgttca gagtaatact tttctacatt atagtgagag
     3661 aaattatgaa ttacagttaa aggtatatta aattactgta ttattttact aattttatgt
     3721 aataaaatac actacattaa aaaa
//
