LOCUS       NM_001080404            1756 bp    mRNA    linear   PRI 04-APR-2024
DEFINITION  Homo sapiens zinc finger protein 878 (ZNF878), mRNA.
ACCESSION   NM_001080404 XM_001131188
VERSION     NM_001080404.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1756)
  AUTHORS   Kimura,K., Wakamatsu,A., Suzuki,Y., Ota,T., Nishikawa,T.,
            Yamashita,R., Yamamoto,J., Sekine,M., Tsuritani,K., Wakaguri,H.,
            Ishii,S., Sugiyama,T., Saito,K., Isono,Y., Irie,R., Kushida,N.,
            Yoneyama,T., Otsuka,R., Kanda,K., Yokoi,T., Kondo,H., Wagatsuma,M.,
            Murakawa,K., Ishida,S., Ishibashi,T., Takahashi-Fujii,A.,
            Tanase,T., Nagai,K., Kikuchi,H., Nakai,K., Isogai,T. and Sugano,S.
  TITLE     Diversification of transcriptional modulation: large-scale
            identification and characterization of putative alternative
            promoters of human genes
  JOURNAL   Genome Res 16 (1), 55-65 (2006)
   PUBMED   16344560
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DA007842.1, BQ222464.1 and AC022415.5.
            
            On May 17, 2019 this sequence version replaced NM_001080404.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ222464.1, SRR1163657.260315.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2142853, SAMEA2148874
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000547628.2/ ENSP00000447931.1
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-22                DA007842.1         7-28
            23-775              BQ222464.1         1-753
            776-1756            AC022415.5         36652-37632         c
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19p13.2"
     gene            1..1756
                     /gene="ZNF878"
                     /note="zinc finger protein 878"
                     /db_xref="GeneID:729747"
                     /db_xref="HGNC:HGNC:37246"
     exon            1..163
                     /gene="ZNF878"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..1756
                     /gene="ZNF878"
                     /codon_start=1
                     /product="zinc finger protein 878"
                     /protein_id="NP_001073873.2"
                     /db_xref="CCDS:CCDS45984.2"
                     /db_xref="GeneID:729747"
                     /db_xref="HGNC:HGNC:37246"
                     /translation="MDSVAFEDVAVNFTQEEWALLDPSQKNLYREVMQETLRNLTSIG
                     KKWNNQYIEDEHQNPRRNLRRLIGERLSESKESHQHGEVLTQVPDDTLKKKTPGVQSY
                     ESSVCGEIGIGLSSLNRHLRAFSYSSSLAIHGRTHTGEKPYECKECGKAFRFPSSVRR
                     HERIHSAKKPYECKQCGKAFSFPSSVRRHERIHSAKKPYECKQCGKALSYLVSFQTHM
                     RMHTGERPHKCNICGKAFFSPSSLKRHEKSHTGEKRYKCKQCDKAFNCPSSFQYHERT
                     HSGEKPYECTQCRKAFRSVKYLRVHERKHTGEKPYECKLCGKGFISSTSFRYHEKTHT
                     GEKPYECKKCVKAFSFVKDLRIHERTHTGEKPFECKQCGKTFTSSNSFHYHERTHTGE
                     KPYECKQCGKAFRSASVLQKHIRTHTGEKPYGCKQCGKVFRVASQLKMHERTHTGEKP
                     YECKQCGKAFISSNSIRYHKRTHTGEKPYKCKQCGKAFISSNSFLYHERIHTGEKPYE
                     CKQCGKAFRSASILQKHVRTHAG"
     exon            164..290
                     /gene="ZNF878"
                     /inference="alignment:Splign:2.1.0"
     exon            291..351
                     /gene="ZNF878"
                     /inference="alignment:Splign:2.1.0"
     exon            352..1756
                     /gene="ZNF878"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actcctaggg ctgctcgcgc tagttaaggt ctggggcttt cttgctccga gagggaccag
       61 ttacttccgc cgtagctgct gttgctctgt cgactgcgct gtgacctgca ctgttcacgg
      121 gacctttaga gaggacgcca gaatacctgg aagccaggaa atggattcgg tggcctttga
      181 ggatgtggct gtgaacttca cccaggagga gtgggctttg ctggatcctt cccagaaaaa
      241 tctctacagg gaagtgatgc aggaaacctt gaggaacctg acctccatag gaaaaaaatg
      301 gaacaaccag tacattgaag atgagcacca aaatcctagg agaaacctaa gaagacttat
      361 aggggagaga ctctctgaaa gtaaagaaag tcatcagcat ggagaagttt tgacacaggt
      421 tccagatgac acactgaaga agaaaactcc tggagtacaa tcatatgaaa gcagtgtgtg
      481 tggagaaatc ggcataggtc tttcatccct taataggcac ctcagagcct ttagttattc
      541 cagtagcctt gcaatacatg gaagaactca cactggggaa aagccttatg aatgtaagga
      601 atgtgggaaa gcattcaggt ttcccagttc tgttcgtaga catgaaagaa tccactctgc
      661 aaaaaaaccc tatgaatgta agcagtgtgg gaaagcattc agttttccca gttctgttcg
      721 tagacatgaa agaatccact ctgcaaaaaa accctatgaa tgtaagcagt gtgggaaagc
      781 attatcttat cttgtaagct ttcagacaca catgagaatg cacactggag agagacctca
      841 taaatgtaac atatgtggga aagccttttt ttctcccagt tcgttaaaaa gacacgagaa
      901 aagtcacact ggagagaaac gctataaatg caagcaatgt gataaagcct tcaattgtcc
      961 cagttccttt caatatcatg aaaggactca cagtggagag aaaccctatg agtgtacaca
     1021 atgtaggaaa gccttcagat ctgtcaagta cctgcgagta catgaaagaa aacacactgg
     1081 agagaaaccc tatgagtgta agctatgtgg taagggattt atttcttcca cttcctttcg
     1141 ctatcatgaa aagactcaca ctggagagaa accttatgaa tgtaaaaaat gtgtgaaagc
     1201 cttcagtttt gtcaaggatc ttcgaataca tgaaaggaca cacactggag agaaaccctt
     1261 tgaatgtaaa caatgtggga aaaccttcac ttcttccaat tcctttcact atcatgaaag
     1321 gactcacact ggagagaaac cctatgagtg taagcaatgt gggaaagcct tcagatctgc
     1381 ctcagtcctt caaaagcaca tacgaactca cacaggagag aaaccctatg gatgtaagca
     1441 atgtggtaaa gtctttagag ttgcctcaca acttaaaatg catgaaagga ctcacacagg
     1501 agagaaaccc tatgagtgta agcaatgtgg aaaagccttc atttcttcta attctattcg
     1561 ctatcataaa aggactcaca ctggagagaa accctataaa tgtaaacagt gtgggaaagc
     1621 cttcatttct tccaactctt ttctctacca tgaaaggatt catactggag agaaacccta
     1681 tgagtgtaag caatgtggta aagcctttag atctgcctca atccttcaaa agcatgtaag
     1741 gactcacgct ggctag
//
