LOCUS       NM_001080821            2583 bp    mRNA    linear   PRI 05-APR-2024
DEFINITION  Homo sapiens zinc finger protein 799 (ZNF799), transcript variant
            1, mRNA.
ACCESSION   NM_001080821 XM_934689 XM_939522 XM_944195
VERSION     NM_001080821.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2583)
  AUTHORS   Kimura,K., Wakamatsu,A., Suzuki,Y., Ota,T., Nishikawa,T.,
            Yamashita,R., Yamamoto,J., Sekine,M., Tsuritani,K., Wakaguri,H.,
            Ishii,S., Sugiyama,T., Saito,K., Isono,Y., Irie,R., Kushida,N.,
            Yoneyama,T., Otsuka,R., Kanda,K., Yokoi,T., Kondo,H., Wagatsuma,M.,
            Murakawa,K., Ishida,S., Ishibashi,T., Takahashi-Fujii,A.,
            Tanase,T., Nagai,K., Kikuchi,H., Nakai,K., Isogai,T. and Sugano,S.
  TITLE     Diversification of transcriptional modulation: large-scale
            identification and characterization of putative alternative
            promoters of human genes
  JOURNAL   Genome Res 16 (1), 55-65 (2006)
   PUBMED   16344560
REFERENCE   3  (bases 1 to 2583)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC008758.7.
            
            On Nov 23, 2018 this sequence version replaced NM_001080821.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DA941237.1, SRR1803611.74485.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03267750, SAMN03267768
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000430385.3/ ENSP00000411084.2
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-204               AC008758.7         108601-108804       c
            205-331             AC008758.7         100830-100956       c
            332-392             AC008758.7         100136-100196       c
            393-2583            AC008758.7         97549-99739         c
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19p13.2"
     gene            1..2583
                     /gene="ZNF799"
                     /gene_synonym="HIT-40; HIT40; ZNF842"
                     /note="zinc finger protein 799"
                     /db_xref="GeneID:90576"
                     /db_xref="HGNC:HGNC:28071"
                     /db_xref="MIM:619916"
     exon            1..204
                     /gene="ZNF799"
                     /gene_synonym="HIT-40; HIT40; ZNF842"
                     /inference="alignment:Splign:2.1.0"
     CDS             202..2133
                     /gene="ZNF799"
                     /gene_synonym="HIT-40; HIT40; ZNF842"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger protein 842; zinc finger protein HIT-40; zinc
                     finger protein 14"
                     /codon_start=1
                     /product="zinc finger protein 799 isoform 1"
                     /protein_id="NP_001074290.1"
                     /db_xref="CCDS:CCDS45989.1"
                     /db_xref="GeneID:90576"
                     /db_xref="HGNC:HGNC:28071"
                     /db_xref="MIM:619916"
                     /translation="MASVALEDVAVNFTREEWALLGPCQKNLYKDVMQETIRNLDCVG
                     MKWKDQNIEDQYRYPRKNLRCRMLERFVESKDGTQCGETSSQIQDSIVTKNTLPGVGP
                     YESRMSGEVIMGHSSLNCYIRVGAGHKPYEYHECGEKPDTHKQRGKAFSYHNSLQTHE
                     RLHTGKKPYNCKECGKSFSSLGNLQRHMAVQRGDGPYKCKLCGKAFFWPSLLHMHERT
                     HTGEKPYECKQCSKAFSFYSSYLRHERTHTGEKLYECKQCSKAFPDYSSCLRHERTHT
                     GKKPYTCKQCGKAFSASTSLRRHETTHTDEKPYACQQCGKAFHHLGSFQRHMVMHTRD
                     GPHKCKICGKGFDCPSSLKSHERTHTGEKLYECKQCGKALSHSSSFRRHMTMHTGDGP
                     HKCKICGKAFVYPSVFQRHEKTHTAEKPYKCKQCGKAYRISSSLRRHETTHTGEKPYK
                     CKCGKAFIDFYSFQNHKTTHAGEKPYECKECGKAFSCFQYLSQHRRTHTGEKPYECNT
                     CKKAFSHFGNLKVHERIHSGEKPYECKECGKAFSWLTCFLRHERIHMREKPYECQQCG
                     KAFTHSRFLQGHEKTHTGENPYECKECGKAFASLSSLHRHKKTHWKKTHTGENPYGCK
                     ECGKAFASLSSLHRHKKTH"
     exon            205..331
                     /gene="ZNF799"
                     /gene_synonym="HIT-40; HIT40; ZNF842"
                     /inference="alignment:Splign:2.1.0"
     exon            332..392
                     /gene="ZNF799"
                     /gene_synonym="HIT-40; HIT40; ZNF842"
                     /inference="alignment:Splign:2.1.0"
     exon            393..2583
                     /gene="ZNF799"
                     /gene_synonym="HIT-40; HIT40; ZNF842"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2557..2562
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZNF799"
                     /gene_synonym="HIT-40; HIT40; ZNF842"
                     /note="hexamer: ATTAAA"
     polyA_site      2583
                     /gene="ZNF799"
                     /gene_synonym="HIT-40; HIT40; ZNF842"
                     /note="major polyA site"
ORIGIN      
        1 gtcaatcagg cgcgcttccc agaggagtgt gtggttgaaa aagcccgcgg cgtcttctcc
       61 acccacctgc gctgggcgct cggtgctcgg ctctgtagct aagagacgac ctggaagttc
      121 cgtggcagcc tgtgtcccgc gggaacccgc attggcagcg ggagccgtcc ggaggacctg
      181 ggacaccgcg gaagtcggga aatggcctca gtggctttag aggatgtggc tgtgaacttc
      241 acccgagaag agtgggcttt gctgggtcct tgtcagaaga atctctacaa agatgtgatg
      301 caggaaacca tcaggaacct ggattgtgta ggaatgaaat ggaaagacca gaacattgaa
      361 gatcaatata gatatcccag gaaaaatcta agatgtcgta tgttagagag atttgttgaa
      421 agtaaagatg gaactcaatg tggagaaaca tctagccaga ttcaagatag tattgtgacc
      481 aagaacactc ttcctggagt aggtccatat gaaagccgta tgagtggaga agtcatcatg
      541 ggtcattcat cccttaattg ttacatcaga gttggtgctg ggcacaaacc atatgagtat
      601 catgaatgtg gagagaagcc agatacgcat aaacaacgtg ggaaagcctt cagttaccac
      661 aactcacttc aaacacatga gaggcttcac actggaaaga aaccatataa ttgtaaagaa
      721 tgtgggaagt ccttcagttc tttgggaaac cttcaaagac acatggcagt gcagcgtgga
      781 gatggacctt ataaatgtaa gttgtgtggg aaagcgtttt tttggcccag tttattacat
      841 atgcatgaga gaacgcacac tggagagaaa ccatatgaat gtaagcagtg ttctaaagcc
      901 ttttcttttt acagttccta tctaagacat gaaagaacac atactgggga gaaactgtat
      961 gaatgtaaac agtgttctaa agccttccct gattacagtt cttgtctaag acatgaaaga
     1021 actcacactg gaaagaaacc ctatacatgt aaacaatgtg ggaaagcctt cagtgcttcc
     1081 acttcccttc gaagacacga aacaactcac actgatgaga aaccctatgc atgtcagcaa
     1141 tgtgggaaag cgtttcatca tctgggaagc tttcaaagac acatggtaat gcacacgaga
     1201 gatggacctc ataagtgtaa gatatgtgga aaaggctttg attgtcctag ttcactgaaa
     1261 agtcatgaaa gaactcacac tggagagaaa ctctatgaat gcaagcagtg tgggaaagcg
     1321 ttatctcata gctcaagctt tcgaagacac atgacaatgc acactggaga tggacctcac
     1381 aaatgcaaga tatgtgggaa agcctttgtt tatcccagtg tatttcaaag gcatgaaaag
     1441 actcacactg cagagaaacc ctataaatgt aaacaatgtg gcaaagccta ccgtatttcc
     1501 agttctcttc gaaggcatga aacaactcat actggagaga aaccctataa atgcaaatgt
     1561 gggaaagcct ttattgattt ctattccttt caaaatcaca aaacaactca tgctggagag
     1621 aagccatatg agtgtaagga atgtgggaaa gcattcagtt gtttccaata cctttctcaa
     1681 catagaagga ctcacacagg agagaaacct tatgagtgta acacatgtaa gaaagccttc
     1741 agtcattttg gtaacttaaa agtacatgaa agaattcact ctggagagaa gccgtatgaa
     1801 tgtaaggaat gtgggaaagc attctcttgg ctcacttgct ttctacgaca tgaaagaatt
     1861 cacatgagag agaaacccta tgagtgtcaa caatgtggta aagccttcac tcattcccgt
     1921 tttcttcaag gacatgaaaa aactcatact ggagagaacc cgtatgaatg taaggaatgt
     1981 gggaaagcat ttgcttctct cagttccttg catagacata aaaagactca ctggaaaaaa
     2041 actcacactg gagagaaccc gtatggatgt aaggaatgtg ggaaagcatt tgcttctctc
     2101 agttccttgc atagacataa aaagactcac tagcattctc tctaaatgta tggaatgtgg
     2161 gaaagcattt attaatttta tttcatttca gatacttgta cgaaacacat tggagataga
     2221 ccctgtgaat gtaagcactt ggtaaaacct taagtaattt cagtttcttt ccagtacagt
     2281 catcccttga tacctgctgg gtattggttc cagcactccg tgagccatgt ccagtccctt
     2341 ttataaaatg acatatttgt atgtaactta cccacatcct cttgtatact ctcaattatg
     2401 tctagattac ttaaaatacc tcatgcattg taaaagctat gcaaatagtt gttctattgt
     2461 attgtttagg gactcatgat aaggaaaaga gtctatgtat tttcagtata gatgcagtaa
     2521 ttgtcagcct atcaacatag tatagtcagc cagaacatta aagtttcttt gtttcaactc
     2581 tca
//
