LOCUS       NM_178523               4356 bp    mRNA    linear   PRI 03-APR-2024
DEFINITION  Homo sapiens zinc finger protein 616 (ZNF616), transcript variant
            1, mRNA.
ACCESSION   NM_178523 XM_030892
VERSION     NM_178523.5
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4356)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CD048470.1, AK092266.1, AC011468.8 and BC032805.1.
            
            On Nov 22, 2018 this sequence version replaced NM_178523.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DA738152.1, SRR1660809.111529.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000600228.6/ ENSP00000471000.1
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-12                CD048470.1         22-33
            13-3038             AK092266.1         1-3026
            3039-3584           AC011468.8         129552-130097       c
            3585-4356           BC032805.1         12-783
FEATURES             Location/Qualifiers
     source          1..4356
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19q13.41"
     gene            1..4356
                     /gene="ZNF616"
                     /note="zinc finger protein 616"
                     /db_xref="GeneID:90317"
                     /db_xref="HGNC:HGNC:28062"
     exon            1..207
                     /gene="ZNF616"
                     /inference="alignment:Splign:2.1.0"
     exon            208..295
                     /gene="ZNF616"
                     /inference="alignment:Splign:2.1.0"
     CDS             284..2629
                     /gene="ZNF616"
                     /codon_start=1
                     /product="zinc finger protein 616"
                     /protein_id="NP_848618.2"
                     /db_xref="CCDS:CCDS33090.1"
                     /db_xref="GeneID:90317"
                     /db_xref="HGNC:HGNC:28062"
                     /translation="MATQGHLTFKDVAIEFSQEEWKCLEPVQKALYKDVMLENYRNLV
                     FLGISPKCVIKELPPTENSNTGERFQTVALERHQSYDIENLYFREIQKHLHDLEFQWK
                     DGETNDKEVPVPHENNLTGKRDQHSQGDVENNHIENQLTSNFESRLAELQKVQTEGRL
                     YECNETEKTGNNGCLVSPHIREKTYVCNECGKAFKASSSLINHQRIHTTEKPYKCNEC
                     GKAFHRASLLTVHKVVHTRGKSYQCDVCGKIFRKNSYFVRHQRSHTGQKPYICNECGK
                     SFSKSSHLAVHQRIHTGEKPYKCNLCGKSFSQRVHLRLHQTVHTGERPFKCNECGKTF
                     KRSSNLTVHQVIHAGKKPYKCDVCGKAFRHRSNLVCHRRIHSGEKQYKCNECGKVFSK
                     RSSLAVHRRIHTVEKPCKCNECGKVFSKRSSLAVHQRIHTGQKTYKCNKCGKVYSKHS
                     HLAVHWRIHTGEKAYKCNECGKVFSIHSRLAAHQRIHTGEKPYKCNECGKVFSQHSRL
                     AVHRRIHTGEKPYKCKECGKVFSDRSAFARHRRIHTGEKPYKCKECGKVFSQCSRLTV
                     HRRIHSGEKPYKCNECGKVYSQYSHLVGHRRVHTGEKPYKCHECGKAFNQGSTLNRHQ
                     RIHTGEKPYKCNQCGNSFSQRVHLRLHQTVHTGDRPYKCNECGKTFKRSSNLTAHQII
                     HAGKKPYKCDECGKVFRHSSHLVSHQRIHTGEKRYKCIECGKAFGRLFSLSKHQRIHS
                     GKKPYKCNECGKSFICRSGLTKHRIRHTGESLTTKLNVTRP"
     exon            296..422
                     /gene="ZNF616"
                     /inference="alignment:Splign:2.1.0"
     exon            423..4356
                     /gene="ZNF616"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3023..3028
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZNF616"
                     /note="hexamer: ATTAAA"
     polyA_site      3047
                     /gene="ZNF616"
                     /note="major polyA site"
     regulatory      4338..4343
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZNF616"
                     /note="hexamer: TATAAA"
     polyA_site      4356
                     /gene="ZNF616"
ORIGIN      
        1 actcccggaa gcagattgcg ccagggaaag gccttatcgc tgtgtgtgtg tttcagtcta
       61 cgtggattaa acattacttc gctccgtctg cctggattaa acgtgcactt tgcagtcctc
      121 acttctccgt accagtgatc tggggatcgc tacggacctt aaaataccca tagccccttc
      181 gcccctgcaa caggcacttc tccccacgtt tgatgtgtga ataattacat tgactgagaa
      241 agaaacccag aagaggaaga agaggaagga aaaggagtca gtgatggcta ctcaggggca
      301 tttgacattc aaggatgtag ccatagaatt ctctcaggag gagtggaaat gcctggagcc
      361 tgtgcagaaa gctttgtaca aggatgtgat gttggagaac tataggaacc tggtcttcct
      421 aggtatctct cctaaatgtg tgatcaagga attaccacca acagagaaca gtaatacagg
      481 agaaaggttc caaacagtgg cactggaaag acatcaaagc tatgatattg aaaatttata
      541 cttcagggaa atacagaaac atctacatga ccttgaattt caatggaaag atggtgaaac
      601 aaatgataaa gaagtgccag tgccccatga aaacaatctt actggtaaaa gagatcaaca
      661 tagtcaaggg gatgtagaaa acaatcatat tgaaaaccag cttacatcaa actttgagtc
      721 acgtctggct gaactgcaga aagttcaaac tgaagggaga ctttatgaat gtaatgaaac
      781 ggagaagaca ggtaataatg gttgtttagt ttctccacac attagggaaa aaacgtatgt
      841 atgtaatgaa tgtggcaaag cctttaaagc gtcttccagc cttattaatc atcagaggat
      901 acatactaca gagaaacctt acaaatgcaa tgagtgtggc aaagcctttc atcgggcctc
      961 actactaact gtacacaagg tagtccatac aagagggaaa tcatatcaat gtgatgtatg
     1021 tggcaagatc ttcagaaaaa attcatattt tgtaagacac caaaggagtc acactggaca
     1081 gaaaccctac atatgtaatg aatgtggcaa gtcctttagt aaaagttccc accttgcagt
     1141 tcatcagaga attcataccg gtgaaaaacc ttacaaatgt aatctgtgtg ggaaatcctt
     1201 tagtcagcgt gtccatctta gacttcatca gacagttcat actggagaga gacccttcaa
     1261 atgtaatgag tgtggcaaaa cctttaaacg gagctcaaac ctcactgtac atcaggtaat
     1321 ccatgcagga aagaaaccat ataaatgtga tgtatgtggc aaggcattca gacatagatc
     1381 aaatcttgta tgtcaccgga gaatccacag tggagagaaa caatacaaat gcaatgaatg
     1441 tggcaaggtc ttcagtaaac gttcaagtct tgcagtgcat cgacgaattc acactgtaga
     1501 gaaaccttgc aaatgcaatg aatgtggcaa ggtcttcagt aaacgttcaa gtcttgcagt
     1561 gcatcagaga attcatactg gacagaaaac ttacaaatgc aataaatgtg gcaaggtgta
     1621 cagtaagcat tcacatcttg cagtgcattg gagaattcat accggcgaga aagcttataa
     1681 atgcaatgaa tgtggcaaag ttttcagcat acattcacga cttgcagctc atcagagaat
     1741 tcatactgga gagaaacctt acaaatgcaa tgaatgtggc aaggtcttca gtcaacattc
     1801 acgtcttgca gtgcatcgga gaattcatac tggagagaaa ccttacaaat gcaaagaatg
     1861 tggcaaggtc ttcagtgacc gttcagcttt tgcaaggcat cggagaattc atactggaga
     1921 gaagccttac aaatgcaaag aatgtggcaa ggtcttcagt caatgttcac gtcttacagt
     1981 gcatcggaga attcatagtg gagagaaacc ttacaaatgc aatgaatgcg gcaaggtcta
     2041 cagtcagtat tcacatcttg tagggcatcg aagagttcat actggagaga aaccatacaa
     2101 atgtcatgaa tgtggcaaag cctttaatca gggctccaca ctcaatagac atcagagaat
     2161 tcataccgga gagaaacctt acaaatgcaa tcagtgtggg aattccttta gtcagcgtgt
     2221 ccatcttaga cttcatcaga ctgttcatac tggagacaga ccttacaaat gtaatgagtg
     2281 tggcaaaacc tttaaacgga gctcaaacct cactgcacat cagataattc atgcaggaaa
     2341 gaaaccatat aaatgtgatg aatgtggcaa ggtattcagg catagttcac atcttgtaag
     2401 tcaccagaga atccacactg gagagaaaag atacaaatgt attgaatgtg gcaaagcctt
     2461 tgggcggttg ttttccctca gcaaacacca aagaattcat tctggcaaaa aaccttataa
     2521 atgtaatgag tgtgggaaat cttttatttg tcgctcaggc ctcactaaac atcgaataag
     2581 acatactgga gagagcctta caactaaact caatgtgaca aggccttaga cgttgtccta
     2641 gtttctggaa tcaccgaata attcctactt actgatatac cttgtatatt taccccttct
     2701 cttgaaatcc ctgtggaatt gtaatctcca gtattggagg tggggcccat tgggaggtga
     2761 ttgaatcatg gaagtggatt tctcaaactg agaaagatgt agcgtcatcc ccttggtgct
     2821 gtcctggcaa tagtgacttc tcttgaggtc tggctgttta gaagtgcata gcacttccct
     2881 gtcgcttgcc ctcattctca ccatgtgaaa taccgacacc cgctttgcct tccaccatga
     2941 ttttaacctt cctgaggctt ccctagaggg tgatcagatg ccagcaccat gttttcattt
     3001 aagccttcag aaatatgagc caattaaact cttttcttta tacattagcc agcctcaggt
     3061 ttttttttgt agcaatgcag ttatgaccta atacatttac acatgcagta aatataccta
     3121 agttttaagc tagtattcac tactcactag gtgtaagaat ttgtatatat attccaggat
     3181 gtatacatcc tggagaaaaa tcacagaagt gtaatacgtg tggcaagaat tctactcaaa
     3241 agccagaact tgtaaatcta ggtaattaaa agggcataga tgtatgaaat gaaatgaggg
     3301 tggcaaaacc tttactagag ttcaatcact acttgtcata agagagttta tactgaaagg
     3361 aaatcatata aatgtatgtg tcagaggctt tccccaggca ttggaactca ctaggcatca
     3421 gaatatacat ctttgagagg aaccacagaa atgtaatgtg catgctaagg tttttacccg
     3481 aacatcaaaa tggaaagagt attcatacta gagacaacct tccaaataaa tggttttaaa
     3541 aaatgaaatg ttcaaagacc tggaatcaac ccaaatgctt atcagtgata gactgaataa
     3601 agaaaatgtg gtacatatac accatgggat actatgcagc catagaaagg aatgagatca
     3661 tgtccattgc agcgatgtgg atggagctgg aagccattat cctcaggaaa ctaacacagg
     3721 aacagaaaat caaacagcac atgttctcac ttaaaagtgg aagctgaaca atgagaacac
     3781 atatacccag ggaggggagc aacacacact ggggcctgct gatgggggtg ggaagggcag
     3841 ggaagtggag catcaggaca aatagctaat gcatttttgc cttaatacca ggtgatgggt
     3901 tggtagatgc agcaaaccac catggcacac attttcctat gtaacaaatt tgcaaattgt
     3961 gcacatgtac ccagaactta aagtgagaca aaaccaatgt ccacgccttt gcagtttgat
     4021 tgaacgtata aaggagaaaa atcctgtaag tatgctgaac atgaaaggac ctggaagcag
     4081 tagtgtgtct tcagccttta ccaaattatc cctacttgag agaaaacttg gaaatgtaat
     4141 caatgtggca caaatttcaa ccagtttttt aaacagacta cacatctttg aaatcatact
     4201 agggataacc aaatctgctt ctccaagatt ggcctggaat attattacag aataactacc
     4261 agacaacatt tgttaaaact caggacagta tgtattttaa aggagcaagt gcatgtgtga
     4321 aaatggctca ttcagtttat aaaatattac attaaa
//
