LOCUS       NM_024840               3057 bp    mRNA    linear   PRI 06-APR-2024
DEFINITION  Homo sapiens zinc finger protein 613 (ZNF613), transcript variant
            2, mRNA.
ACCESSION   NM_024840
VERSION     NM_024840.4
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3057)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   2  (bases 1 to 3057)
  AUTHORS   Purfield,D.C., Evans,R.D., Carthy,T.R. and Berry,D.P.
  TITLE     Genomic Regions Associated With Gestation Length Detected Using
            Whole-Genome Sequence Data Differ Between Dairy and Beef Cattle
  JOURNAL   Front Genet 10, 1068 (2019)
   PUBMED   31749838
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK027565.1, CA427456.1 and AC011460.3.
            
            On May 31, 2019 this sequence version replaced NM_024840.3.
            
            Transcript Variant: This variant (2) lacks two alternate exons and
            uses a downstream start codon, compared to variant 1. The resulting
            isoform (2) has a shorter N-terminus, compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK027565.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA2145313,
                                           SAMEA2149004 [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2188              AK027565.1         38-2225
            2189-2194           CA427456.1         17-22               c
            2195-3057           AC011460.3         51669-52531         c
FEATURES             Location/Qualifiers
     source          1..3057
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19q13.41"
     gene            1..3057
                     /gene="ZNF613"
                     /note="zinc finger protein 613"
                     /db_xref="GeneID:79898"
                     /db_xref="HGNC:HGNC:25827"
     exon            1..69
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     exon            70..169
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     exon            170..334
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     exon            335..461
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     CDS             428..2173
                     /gene="ZNF613"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="zinc finger protein 613 isoform 2"
                     /protein_id="NP_079116.2"
                     /db_xref="CCDS:CCDS12844.1"
                     /db_xref="GeneID:79898"
                     /db_xref="HGNC:HGNC:25827"
                     /translation="MLENYSNLVSVGYQASKPDALFKLEQGEPWTVENEIHSQICPEI
                     KKVDNHLQMHSQKQRCLKRVEQCHKHNAFGNIIHQRKSDFPLRQNHDTFDLHGKILKS
                     NLSLVNQNKRYEIKNSVGVNGDGKSFLHAKHEQFHNEMNFPEGGNSVNTNSQFIKHQR
                     TQNIDKPHVCTECGKAFLKKSRLIYHQRVHTGEKPHGCSICGKAFSRKSGLTEHQRNH
                     TGEKPYECTECDKAFRWKSQLNAHQKIHTGEKSYICSDCGKGFIKKSRLINHQRVHTG
                     EKPHGCSLCGKAFSKRSRLTEHQRTHTGEKPYECTECDKAFRWKSQLNAHQKAHTGEK
                     SYICRDCGKGFIQKGNLIVHQRIHTGEKPYICNECGKGFIQKGNLLIHRRTHTGEKPY
                     VCNECGKGFSQKTCLISHQRFHTGKTPFVCTECGKSCSHKSGLINHQRIHTGEKPYTC
                     SDCGKAFRDKSCLNRHRRTHTGERPYGCSDCGKAFSHLSCLVYHKGMLHAREKCVGSV
                     KLENPCSESHSLSHTRDLIQDKDSVNMVTLQMPSVAAQTSLTNSAFQAESKVAIVSQP
                     VARSSVSADSRICTE"
     exon            462..554
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     exon            555..3057
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2169..2174
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZNF613"
                     /note="hexamer: AATAAA"
     polyA_site      2189
                     /gene="ZNF613"
                     /note="major polyA site"
     regulatory      3033..3038
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZNF613"
                     /note="hexamer: AATGAA"
     polyA_site      3057
                     /gene="ZNF613"
ORIGIN      
        1 gcccagaagt ggaataattc aggaaagtgc aggttctggg aagtctcggt gggttccccg
       61 caaaatcagg cttgagtgca gtggcgcaat cgtggctcac tgcagcctcc atctcccggg
      121 gctcaggtga ttttcccacc tcagctttcc cgagtagctg ggactacaga gatggcatct
      181 cactatgttg cccaggctga tcttgaactc ctgacctcaa gtgatcctct ctccttggcc
      241 tcctaaagtg ctgggattcc aggtgtgagc cacttcaccc agccacattt atccatcttg
      301 taaaatattg ctttgttttt tggtgcattt caaagaatca ctgaccctgg aggatgtggc
      361 tgtggagttc acttgggagg agtggcagct cctcggccct gctcagaagg acctgtaccg
      421 agacgtgatg ttggagaact atagcaacct cgtgtcagtg gggtatcaag ccagcaaacc
      481 agatgcactc ttcaagttgg aacaaggaga gccatggaca gtagaaaatg aaatccacag
      541 ccaaatctgt ccagaaatca agaaagttga caatcatcta cagatgcact cacaaaagca
      601 aagatgtctg aagagagtgg aacaatgcca taaacataat gcatttggaa acatcattca
      661 tcagaggaaa agtgattttc ctttaaggca aaatcatgat acatttgact tacatgggaa
      721 aatactgaaa tcaaatttaa gtttagtcaa ccagaacaaa aggtatgaaa tcaagaattc
      781 tgtgggggtt aatggagatg ggaaatcctt ccttcatgcc aagcatgaac aatttcataa
      841 tgaaatgaac ttccccgaag gtggaaattc tgtgaataca aattcacaat tcattaagca
      901 tcagcgaact caaaacatag ataaacccca tgtatgcact gagtgtggga aggctttcct
      961 caagaagtct cgcctcatct atcatcagag agttcacact ggggagaaac ctcatggatg
     1021 cagtatatgt gggaaagcct tctccagaaa gtccgggctc actgaacacc agagaaacca
     1081 cacaggagag aaaccctatg aatgcactga atgtgacaaa gcattccgct ggaaatcaca
     1141 gctcaatgca caccagaaaa ttcatacagg agagaagtca tatatatgca gtgattgtgg
     1201 aaaaggcttc atcaagaagt ctcggctcat taatcatcag agagttcata caggagagaa
     1261 accacatgga tgcagcctgt gtgggaaggc cttctccaaa aggtccaggc tcactgaaca
     1321 ccagagaact catacaggag agaaacccta tgaatgcact gaatgtgaca aagcattccg
     1381 ctggaaatca cagctcaatg cacatcagaa agctcacaca ggagagaagt catatatatg
     1441 ccgtgattgt ggaaaaggct tcattcagaa gggaaatctc attgtacatc agcgaattca
     1501 tactggagaa aaaccctata tatgcaatga atgtggaaaa ggcttcatcc aaaagggcaa
     1561 cctccttatt catcgacgta ctcacactgg agagaaaccc tatgtatgca atgaatgtgg
     1621 gaaaggcttc agccagaaga catgtttaat atcccatcag agatttcaca caggaaagac
     1681 accctttgta tgtactgagt gtggaaaatc ctgctcacac aagtcaggtc tcattaacca
     1741 ccagagaatt cacacaggag agaaacccta tacatgcagt gactgtggga aagctttcag
     1801 agataaatca tgtctcaaca gacatcggag aactcataca ggggagagac cgtatggatg
     1861 ctctgattgt gggaaagctt tctcccactt gtcatgcctt gtttatcata agggaatgct
     1921 gcatgcaaga gagaaatgtg taggttcagt caaattggaa aatccttgct cagagagtca
     1981 tagcttatca catacacgtg atctcataca ggataaagac tctgttaaca tggtgactct
     2041 gcagatgcct tctgtggcag ctcagacctc attaactaac agtgcgttcc aagcagagag
     2101 caaagtagcc attgtgagcc agcctgttgc cagaagttca gtctcagcag atagtagaat
     2161 ttgcacagaa taaaaaccat atgaatgcag tgaatgtggt agtgctttca gtgatcaatt
     2221 acatcatatg tcacaaaaaa cacagaggaa caaactgata tattcaaggt ggaaagccct
     2281 tgaataaaac cttatggcta ataagcatat actcagagaa aaatagtatg aagtggagac
     2341 tgggaaattc ttttatggga agatagatct tctcatcagt gaccatagat cacatcttca
     2401 gtgagcttat agttggtaga aatataatga tcatggaaaa gtccttgttc agaaacagta
     2461 cgccagtagg tatcaggggg tttacacagg agagaaactt ttggaagacc tttgaaggct
     2521 atgaatgtgg cagggttgct agtggtacat tctgccttat cctcagaggg aatcatatag
     2581 aaataaaact atgaaaatgt aactagaaca tcttcatcaa aatatgaaag aacacacgaa
     2641 gcaaataagc cctgtgaaaa ggagtatttt agagatttcg atcagaaatc taacatcatt
     2701 atatggcaga taatatacag gatgtgtatt ttaggacaat ataccttgaa tcactagttg
     2761 atatgtcaat gactaattaa aaggggttgt cagtgttaca catcattggt taaatttata
     2821 gcacaatgta cctcttcccc cttttttgat aagagtcttc tattcccaac caagatcatt
     2881 atatgattag ctcttgtgtt tctttgattc caaatttctt cacttgttat ttcagactac
     2941 tgaagctctt caaaaggaaa aatgtattta atttaataat gtaacacaac aagtttggat
     3001 gtgtttaact ttataaataa tcaccccaga ggaatgaagt tcaaaacttg tgaataa
//
