LOCUS       NM_001031721            3165 bp    mRNA    linear   PRI 04-APR-2024
DEFINITION  Homo sapiens zinc finger protein 613 (ZNF613), transcript variant
            1, mRNA.
ACCESSION   NM_001031721
VERSION     NM_001031721.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3165)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   2  (bases 1 to 3165)
  AUTHORS   Purfield,D.C., Evans,R.D., Carthy,T.R. and Berry,D.P.
  TITLE     Genomic Regions Associated With Gestation Length Detected Using
            Whole-Genome Sequence Data Differ Between Dairy and Beef Cattle
  JOURNAL   Front Genet 10, 1068 (2019)
   PUBMED   31749838
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK027565.1, BC057776.1, CA427456.1 and AC011460.3.
            
            On Nov 22, 2018 this sequence version replaced NM_001031721.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1803612.82402.1,
                                           SRR1803614.63328.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1968540
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000293471.11/ ENSP00000293471.5
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 AK027565.1         38-41
            5-676               BC057776.1         1-672
            677-2296            AK027565.1         606-2225
            2297-2302           CA427456.1         17-22               c
            2303-3165           AC011460.3         51669-52531         c
FEATURES             Location/Qualifiers
     source          1..3165
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19q13.41"
     gene            1..3165
                     /gene="ZNF613"
                     /note="zinc finger protein 613"
                     /db_xref="GeneID:79898"
                     /db_xref="HGNC:HGNC:25827"
     exon            1..69
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     exon            70..234
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     exon            235..442
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     CDS             428..2281
                     /gene="ZNF613"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="zinc finger protein 613 isoform 1"
                     /protein_id="NP_001026891.2"
                     /db_xref="CCDS:CCDS33089.1"
                     /db_xref="GeneID:79898"
                     /db_xref="HGNC:HGNC:25827"
                     /translation="MIKSQESLTLEDVAVEFTWEEWQLLGPAQKDLYRDVMLENYSNL
                     VSVGYQASKPDALFKLEQGEPWTVENEIHSQICPEIKKVDNHLQMHSQKQRCLKRVEQ
                     CHKHNAFGNIIHQRKSDFPLRQNHDTFDLHGKILKSNLSLVNQNKRYEIKNSVGVNGD
                     GKSFLHAKHEQFHNEMNFPEGGNSVNTNSQFIKHQRTQNIDKPHVCTECGKAFLKKSR
                     LIYHQRVHTGEKPHGCSICGKAFSRKSGLTEHQRNHTGEKPYECTECDKAFRWKSQLN
                     AHQKIHTGEKSYICSDCGKGFIKKSRLINHQRVHTGEKPHGCSLCGKAFSKRSRLTEH
                     QRTHTGEKPYECTECDKAFRWKSQLNAHQKAHTGEKSYICRDCGKGFIQKGNLIVHQR
                     IHTGEKPYICNECGKGFIQKGNLLIHRRTHTGEKPYVCNECGKGFSQKTCLISHQRFH
                     TGKTPFVCTECGKSCSHKSGLINHQRIHTGEKPYTCSDCGKAFRDKSCLNRHRRTHTG
                     ERPYGCSDCGKAFSHLSCLVYHKGMLHAREKCVGSVKLENPCSESHSLSHTRDLIQDK
                     DSVNMVTLQMPSVAAQTSLTNSAFQAESKVAIVSQPVARSSVSADSRICTE"
     exon            443..569
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     exon            570..662
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     exon            663..3165
                     /gene="ZNF613"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2277..2282
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZNF613"
                     /note="hexamer: AATAAA"
     polyA_site      2297
                     /gene="ZNF613"
                     /note="major polyA site"
     regulatory      3141..3146
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZNF613"
                     /note="hexamer: AATGAA"
     polyA_site      3165
                     /gene="ZNF613"
ORIGIN      
        1 gcccagaagt ggaataattc aggaaagtgc aggttctggg aagtctcggt gggttccccg
       61 caaaatcaga gatggcatct cactatgttg cccaggctga tcttgaactc ctgacctcaa
      121 gtgatcctct ctccttggcc tcctaaagtg ctgggattcc aggtgtgagc cacttcaccc
      181 agccacattt atccatcttg taaaatattg ctttgttttt tggtgcattt caaacccaca
      241 ggtcctgact tcaggagcaa gacacttcaa gtgaggtgag gaggaggttc caggacctgg
      301 ataccatcct ttgcagggat gtaattcacc agagaccaag atttctagcc agaaattgag
      361 ggcagctcaa ggagagacta cagacacagc atcctactta ctggctattt cccagtaaca
      421 aaagaaaatg atcaagtccc aggaatcact gaccctggag gatgtggctg tggagttcac
      481 ttgggaggag tggcagctcc tcggccctgc tcagaaggac ctgtaccgag acgtgatgtt
      541 ggagaactat agcaacctcg tgtcagtggg gtatcaagcc agcaaaccag atgcactctt
      601 caagttggaa caaggagagc catggacagt agaaaatgaa atccacagcc aaatctgtcc
      661 agaaatcaag aaagttgaca atcatctaca gatgcactca caaaagcaaa gatgtctgaa
      721 gagagtggaa caatgccata aacataatgc atttggaaac atcattcatc agaggaaaag
      781 tgattttcct ttaaggcaaa atcatgatac atttgactta catgggaaaa tactgaaatc
      841 aaatttaagt ttagtcaacc agaacaaaag gtatgaaatc aagaattctg tgggggttaa
      901 tggagatggg aaatccttcc ttcatgccaa gcatgaacaa tttcataatg aaatgaactt
      961 ccccgaaggt ggaaattctg tgaatacaaa ttcacaattc attaagcatc agcgaactca
     1021 aaacatagat aaaccccatg tatgcactga gtgtgggaag gctttcctca agaagtctcg
     1081 cctcatctat catcagagag ttcacactgg ggagaaacct catggatgca gtatatgtgg
     1141 gaaagccttc tccagaaagt ccgggctcac tgaacaccag agaaaccaca caggagagaa
     1201 accctatgaa tgcactgaat gtgacaaagc attccgctgg aaatcacagc tcaatgcaca
     1261 ccagaaaatt catacaggag agaagtcata tatatgcagt gattgtggaa aaggcttcat
     1321 caagaagtct cggctcatta atcatcagag agttcataca ggagagaaac cacatggatg
     1381 cagcctgtgt gggaaggcct tctccaaaag gtccaggctc actgaacacc agagaactca
     1441 tacaggagag aaaccctatg aatgcactga atgtgacaaa gcattccgct ggaaatcaca
     1501 gctcaatgca catcagaaag ctcacacagg agagaagtca tatatatgcc gtgattgtgg
     1561 aaaaggcttc attcagaagg gaaatctcat tgtacatcag cgaattcata ctggagaaaa
     1621 accctatata tgcaatgaat gtggaaaagg cttcatccaa aagggcaacc tccttattca
     1681 tcgacgtact cacactggag agaaacccta tgtatgcaat gaatgtggga aaggcttcag
     1741 ccagaagaca tgtttaatat cccatcagag atttcacaca ggaaagacac cctttgtatg
     1801 tactgagtgt ggaaaatcct gctcacacaa gtcaggtctc attaaccacc agagaattca
     1861 cacaggagag aaaccctata catgcagtga ctgtgggaaa gctttcagag ataaatcatg
     1921 tctcaacaga catcggagaa ctcatacagg ggagagaccg tatggatgct ctgattgtgg
     1981 gaaagctttc tcccacttgt catgccttgt ttatcataag ggaatgctgc atgcaagaga
     2041 gaaatgtgta ggttcagtca aattggaaaa tccttgctca gagagtcata gcttatcaca
     2101 tacacgtgat ctcatacagg ataaagactc tgttaacatg gtgactctgc agatgccttc
     2161 tgtggcagct cagacctcat taactaacag tgcgttccaa gcagagagca aagtagccat
     2221 tgtgagccag cctgttgcca gaagttcagt ctcagcagat agtagaattt gcacagaata
     2281 aaaaccatat gaatgcagtg aatgtggtag tgctttcagt gatcaattac atcatatgtc
     2341 acaaaaaaca cagaggaaca aactgatata ttcaaggtgg aaagcccttg aataaaacct
     2401 tatggctaat aagcatatac tcagagaaaa atagtatgaa gtggagactg ggaaattctt
     2461 ttatgggaag atagatcttc tcatcagtga ccatagatca catcttcagt gagcttatag
     2521 ttggtagaaa tataatgatc atggaaaagt ccttgttcag aaacagtacg ccagtaggta
     2581 tcagggggtt tacacaggag agaaactttt ggaagacctt tgaaggctat gaatgtggca
     2641 gggttgctag tggtacattc tgccttatcc tcagagggaa tcatatagaa ataaaactat
     2701 gaaaatgtaa ctagaacatc ttcatcaaaa tatgaaagaa cacacgaagc aaataagccc
     2761 tgtgaaaagg agtattttag agatttcgat cagaaatcta acatcattat atggcagata
     2821 atatacagga tgtgtatttt aggacaatat accttgaatc actagttgat atgtcaatga
     2881 ctaattaaaa ggggttgtca gtgttacaca tcattggtta aatttatagc acaatgtacc
     2941 tcttccccct tttttgataa gagtcttcta ttcccaacca agatcattat atgattagct
     3001 cttgtgtttc tttgattcca aatttcttca cttgttattt cagactactg aagctcttca
     3061 aaaggaaaaa tgtatttaat ttaataatgt aacacaacaa gtttggatgt gtttaacttt
     3121 ataaataatc accccagagg aatgaagttc aaaacttgtg aataa
//
